Basic Information

Insect: Lucilia cuprina
Gene Symbol: -
Assembly: GCA_001187945.1
Location: JRES01001421.1:422196-426372[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0048 0.32 11.2 0.8 1 23 363 386 363 386 0.93

2 12 0.00012 0.0079 16.3 2.9 2 23 389 410 388 410 0.97

3 12 8.6e-05 0.0057 16.7 0.7 1 23 417 439 417 439 0.99

4 12 2e-07 1.3e-05 25.0 1.1 1 23 445 467 445 467 0.99

5 12 0.00011 0.0076 16.3 2.5 1 23 474 496 474 496 0.98

6 12 1.4e-05 0.00096 19.2 3.2 1 23 502 524 502 524 0.97

7 12 3.1e-05 0.002 18.1 0.2 1 23 530 552 530 552 0.97

8 12 1.3e-05 0.00086 19.3 0.8 1 23 558 581 558 581 0.97

9 12 0.0014 0.092 12.9 2.1 1 23 587 610 587 610 0.95

10 12 7.1e-06 0.00047 20.1 1.2 1 23 616 638 616 638 0.98

11 12 6.8e-05 0.0045 17.1 0.5 1 23 644 666 644 666 0.96

12 12 0.001 0.069 13.3 0.2 1 22 672 693 672 696 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0048	0.32	11.2	0.8	1	23	363	386	363	386	0.93
2	12	0.00012	0.0079	16.3	2.9	2	23	389	410	388	410	0.97
3	12	8.6e-05	0.0057	16.7	0.7	1	23	417	439	417	439	0.99
4	12	2e-07	1.3e-05	25.0	1.1	1	23	445	467	445	467	0.99
5	12	0.00011	0.0076	16.3	2.5	1	23	474	496	474	496	0.98
6	12	1.4e-05	0.00096	19.2	3.2	1	23	502	524	502	524	0.97
7	12	3.1e-05	0.002	18.1	0.2	1	23	530	552	530	552	0.97
8	12	1.3e-05	0.00086	19.3	0.8	1	23	558	581	558	581	0.97
9	12	0.0014	0.092	12.9	2.1	1	23	587	610	587	610	0.95
10	12	7.1e-06	0.00047	20.1	1.2	1	23	616	638	616	638	0.98
11	12	6.8e-05	0.0045	17.1	0.5	1	23	644	666	644	666	0.96
12	12	0.001	0.069	13.3	0.2	1	22	672	693	672	696	0.92

Sequence Information

Coding Sequence: ATGGAATCTGTTCGCTGTTACTTGTGTGACCATGAATTTGTGGAAGGCGAAGAGCCATGGTTAATGTTTGAGCAAAGATTACGAGAAGACGGACAAGTAGAATGTTCACTGGCTGATTTGTTGGGCAACATATTAGAAAAAGAATTGGAAGAGGCTTTAGCCCATTCTACATTACTCTGTGATTCATGTAATGCTGATGTTTTGGAATATGAAAGTCTTGAAAAGCGTTTTTCCCAAATACGGGAAAGAATTTTAAGTTCATACAAAGAAAATTCTACGATACAGAATTTGAATAACTTGTTGCAAGGAAATGTTATTATTGCCAATGGATGCCTGCCACAAGCAAATgaagaaaatactaaatttcTTGTTGATAATGCAGAAaccatagaaaatatttctaatggGGAATATTTAGGAATTACGGAAATGGATTTAGTAGAAGAGGTTCAGGACGATGAACTAGAATGTGAAgagaatttaaatgtaaataatctaaaaaatgaACAGGCGCCAGATCACGATGATGTAAGATTTATTGATAATGTCAGTTCACAAATCGTACCTGATCATTTTGATTTTGCCGCCTTTAATGAACATGTAGCACAAAATTCTTTACCCGCTGGTGTACTAAATTTATCAGATGGTCTTGTCAATTTAGAAGTTTCGGAGAAGTCTGTTGATGTTCAAGACATACCTTTGGAAGGTCAAgATATCATTATATATGACGTTAACACGGACCAGATTCAACAGGGCGACTTAATTATTCAACAAGACAACGATAGTCGTGATTTGAAAACGTATGATAGTACTGAAGACGACAatctgaattttataattagtaCAGATATTTTTACAAGTGAAGGCAACTGTGAAAATTCACAGCAATCAGCTGCATCAGAAATAACACAAAATGATAATGTACAGCAACAGGATACTAGCACTTCTGAGACAAAACCCACAGCCCCTAAAGTGGTTTGTAAGCAAGATGGAGACACTTTTATTTGCCTAATATGCGAAATATCGCCACATTTTGAACGCCAGACACTAGTGgaacattttcaaacatttcataattcAAAATTCTATATGTGTGAGCAATGTCATGAAGGATTTGGAAAACGACAAGACTTGAAATTACACACAGAGCTCGGTCACATAATACAGTGTGAGCATTGTGAACGGACGTTCAACAATAATCGTTTGTATCGTATACACAAACGGGTGCACTACAATAATACGAAGCAATATGAATGTCATGTATGCCAGAAAATGTATGTGTCCAAAGCGATTTTGGAGGAACATATGAACACTCATACTGGTGTAAGACCCTATAAATGCAGCGAATGTCCCAAAGATTTCGCCTCGAAATATACACTTCAAACACATATGAAAATTCATAAGGAACGACCGCGTCCGTATCAGTGTGATCAGTGTGATAAAAGGTTTTTGAATCAACAAAATCTGAATCAGCATAAAAAATTGCATGTCTCTGTAAAAGCCTTCCATTGTGAGGTCTGCAATAAGGCTTTCACCACTCAGCATAGTTTACAAGTTCATAAAATAGTACATTCAGGTCAAAGGCCCTTTATTTGTCGTATTTGTGGAAAATCATTTGCACGTAGACCGGAAATAAAAGATCATGAACGTATACATACTGGTGAGAAACCTTTTAAATGTGAATACTGTCCGATGGCTTTTGCTCAGCGCACTAATTTGGCTAGTCACAAGAAATCTACACATTTGAATGAGAAACTTCACAAATGTGATCTATGCTTGCGATCTTTTAAACGTAAACGATTGTTAGATTACCATATACAAGCCATTCATACGGGTGAACGGCCGCATAAGTGTGAAATATGTGGAGCAGGATTTGTCTATCCAGAGCACTACAAAAAACACATGCTCATACATAGTGGGAAGAAGCCATATGCATGCGAGGTTTGTGGCAAACAATTCAACAGTCGTGACAATCGTAATGCCCATCGTTTTGTGCACAGTGATAAGAAGCCTTACGAATGCATGGAATGTGGTGCGGGTTTTATGCGCAAACCGCTTCTTCTAACACAcatgaaacaaacaaaacacataaacGATACAATAATTATAAATCAGCCACAATTTACTCAACATCAACCAATGGAAATTGGCAGTATCACTTCAACCTCGTCCTCTGCGgaatacaataatttaaatcaaGAAGAATCGGAAATCGATGTTGACAATGATCTAAAATCACAAGAAGTTTCCGATGAAACTCtcgaaaaaatcatatttaaagcTGACGACTTGTTAGCAGAAAACGTTTCAGTTGCATCGATTACTGACAAAGTTGTAGACCAAGACGAAAATGTGATAACTGCTGTAGGTGATCATTTAATGAAAAGTGATTTggataatgttaaatatttggaATTTGAAGATTTAGAACATGATGGTCATCAAACTCTAACATGGGTCAACATAGGTGATGATAAAGTTTAA
Protein Sequence: MESVRCYLCDHEFVEGEEPWLMFEQRLREDGQVECSLADLLGNILEKELEEALAHSTLLCDSCNADVLEYESLEKRFSQIRERILSSYKENSTIQNLNNLLQGNVIIANGCLPQANEENTKFLVDNAETIENISNGEYLGITEMDLVEEVQDDELECEENLNVNNLKNEQAPDHDDVRFIDNVSSQIVPDHFDFAAFNEHVAQNSLPAGVLNLSDGLVNLEVSEKSVDVQDIPLEGQDIIIYDVNTDQIQQGDLIIQQDNDSRDLKTYDSTEDDNLNFIISTDIFTSEGNCENSQQSAASEITQNDNVQQQDTSTSETKPTAPKVVCKQDGDTFICLICEISPHFERQTLVEHFQTFHNSKFYMCEQCHEGFGKRQDLKLHTELGHIIQCEHCERTFNNNRLYRIHKRVHYNNTKQYECHVCQKMYVSKAILEEHMNTHTGVRPYKCSECPKDFASKYTLQTHMKIHKERPRPYQCDQCDKRFLNQQNLNQHKKLHVSVKAFHCEVCNKAFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEYCPMAFAQRTNLASHKKSTHLNEKLHKCDLCLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIINQPQFTQHQPMEIGSITSTSSSAEYNNLNQEESEIDVDNDLKSQEVSDETLEKIIFKADDLLAENVSVASITDKVVDQDENVITAVGDHLMKSDLDNVKYLEFEDLEHDGHQTLTWVNIGDDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259368;
90% Identity: iTF_00922284;
80% Identity: -