Bbay024912.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Bellardia bayeri
Gene Symbol
-
Assembly
GCA_950370525.1
Location
OX493268.1:27776038-27783284[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.02 1.6 10.2 2.4 1 23 365 388 365 388 0.94
2 12 0.00037 0.03 15.6 1.5 2 23 391 412 390 412 0.97
3 12 5.2e-05 0.0043 18.3 0.1 1 23 419 441 419 441 0.99
4 12 2.3e-06 0.00019 22.5 1.5 1 23 447 469 447 469 0.99
5 12 0.00023 0.019 16.3 2.1 1 23 476 498 476 498 0.98
6 12 6.2e-06 0.0005 21.2 1.5 1 23 504 526 504 526 0.97
7 12 5.8e-05 0.0047 18.1 0.2 1 23 532 554 532 554 0.97
8 12 2.4e-05 0.002 19.3 0.8 1 23 560 583 560 583 0.97
9 12 0.0026 0.21 12.9 2.1 1 23 589 612 589 612 0.95
10 12 0.00013 0.011 17.0 3.2 1 23 618 640 618 640 0.98
11 12 0.00013 0.01 17.1 0.5 1 23 646 668 646 668 0.96
12 12 0.0019 0.16 13.3 0.2 1 22 674 695 674 698 0.92

Sequence Information

Coding Sequence
ATGGAATCTGTTCGCTGTTATTTGTGTGACCATGAATTCGTAGAAGGCGAAGAGCCATGGCTAATGTTTGAGCAACGATTACGTGAAGACGGACAAGTGGAATGTTCATTGGCTGATTTGTTGGGTACAATATTAGAAAAGGATTTGGAGGAGTCTTTATCTCATTCTACAttgCTGTGTGATTCCTGCAATGCAGATGTTTTAGAGTATGAAAGTCTGGAAAAGCGTTTTTCCCAATTACGGGAACGAATTTTGAGTTCATACAAAGAAAATTCAACTATacaaagtttaaacaatttaattcatGGAACATCTATTACCGTTGGATCTTTGCCACATCAATGCGATGAGAATAATAAATTACCAATTGACAATCCTGAAGGCATGGAGAATATATCAAATCCAGAATATACTAATATTACGGAAATGGACTTAGTAGAGGAAATTCAGGACGAAGAGCTTGAGTGTGAAgacgatttaaatgtaaatgtgcTAGGAAGCGAGCATGTGCCAGATCATGGTGATGTTGGATTCGACGTCAACGTTAGCTCCGAGATAGTACCTGATCATTTTGATTTTGCCGCTTTTAATGAACATGTAGCCCAGAATTCTCTACCTTCTGGTGTACTGAATTTATCAGACGGCCTTGTCAATTTAGAAGTATCGGAAAAGTCCATAGATGTTCAAGACATACCATTGGATGGCcaagatATTATTATTTACGATGTTAATGCGGACCAAATCCAACAAGGTGATTTAATTATTCAACAAGATAACGACAACTGTGAATTGAAGAATTATGACAGTACAGAAGatgatgatcttaattttataattagcaCAGATATTTTCACAAGCGAAGGCAACTGTGAAGATTCCCAACAATCGAATGCTTCCGAATTAATAACGGTAAATGATAATGAACAACAGGAAAGTGCTTTATCTGAGACAGCTTCGGCGCTAATAACACCTCCTAAACCGGTTTGCAAGCAAAATGAtgacttttttgtttgtcttcTTTGCGAGATATCGCCACAATATGAACGTCATATGTTGATAGaacattttcaaacatttcacaattcaaaatttcatatGTGTGAACAGTGTCATCAGGGATTTGGAAAACGGCAGGAACTGAAGACTCATACTGAGATCGGTCATATAATAAAGTGTGAGTATTGTGAACAAACGTTCACTAATACACGTTTGTATCGCATACACAAACGTATACATTACAATAATACCAAACCATATGAATGTCCTGTGTGCCAGAAAACGTATGTGTCCAAAGCGATTTTGGAAGAACATATGAACACACACACTGGCGTAAGACCATTTAAATGCAGTGAATGCCCTAAAGATTTTGCTTCAAAATATACGCTGCAGACACATTTGAAGAGTCATAAGGAACGTCCGCGTCCCTACCAGTGCGATCTATGTGACAAACGTTTTTTGAATCAACAAAACCTGAatcaacataaaaaattacatgTTTCCGTTAGAGCGTTTCAATGTGATGTCTGCAGCAAGGCCTTTACCACTCAGCATAGTTTGCAAGTGCATAAAATAGTACATTCGGGACAGAGGCCCTTTATTTGTCGTATTTGTGGAAAGTCGTTTGCGCGAAGGCCGGAAATCAAAGACCATGAACGCATTCATACTGGAGAGAAGCCATTTAAATGTGAATACTGCCCAATGGCCTTTGCTCAACGCACCAATTTGGCCAGTCACAAGAAATCAACACATTTAAATGAGAAATTACACAAATGCGATCTATGTTTGCGATCTTTTAAGCGCAAACGTTTGTTAGATTATCACATACAGGCTATTCATACGGGAGAACGGCCGCATAAATGTGAAGTATGTGGAGCAGGGTTTGTCTATCCAGaacattataaaaaacacaTGCATATACACAGTGGCAAGAAGCCGTATGCATGCGAAGTGTGTGGCAAGCAATTCAATAGTCGTGACAACCGTAATGCTCATCGTTTTGTGCACAGTGATAAAAAGCCTTACGAATGTATGGAGTGTGGAGCGGGCTTTATGCGCAAACCCCTTCTTCTAACACACATGAAGCAAACAAAACACATAAACGATACAATAATTGTAAATCAACCACAGTTTACTCAACACCAAGCGATGGAAGTTGCAAGCATCTCTACTACCTCCTCAACTGTCATGTATAATAATGTACAAGACGAAGAATCAGAAATCGATGTTGACAATGATCTAAGATCACAAGAGGTTTCCGAAACCCTTGAAAAAATCATGTTCAAAGCTGAAGACTTATTGGCAGAGAATGTTTCAGTTTCTTCGATTGCAGATAAAGATGGCGACGATGATGAACATGTGATAACGATCGTAGGTGATCATTTAATGAAAGGTGACCTAGACGATGTTAAATATTTGGAATTTGCAGATTTAGAACGTGAAGACCATCAAACTTTGACGTGGGTGACGCGTTAA
Protein Sequence
MESVRCYLCDHEFVEGEEPWLMFEQRLREDGQVECSLADLLGTILEKDLEESLSHSTLLCDSCNADVLEYESLEKRFSQLRERILSSYKENSTIQSLNNLIHGTSITVGSLPHQCDENNKLPIDNPEGMENISNPEYTNITEMDLVEEIQDEELECEDDLNVNVLGSEHVPDHGDVGFDVNVSSEIVPDHFDFAAFNEHVAQNSLPSGVLNLSDGLVNLEVSEKSIDVQDIPLDGQDIIIYDVNADQIQQGDLIIQQDNDNCELKNYDSTEDDDLNFIISTDIFTSEGNCEDSQQSNASELITVNDNEQQESALSETASALITPPKPVCKQNDDFFVCLLCEISPQYERHMLIEHFQTFHNSKFHMCEQCHQGFGKRQELKTHTEIGHIIKCEYCEQTFTNTRLYRIHKRIHYNNTKPYECPVCQKTYVSKAILEEHMNTHTGVRPFKCSECPKDFASKYTLQTHLKSHKERPRPYQCDLCDKRFLNQQNLNQHKKLHVSVRAFQCDVCSKAFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEYCPMAFAQRTNLASHKKSTHLNEKLHKCDLCLRSFKRKRLLDYHIQAIHTGERPHKCEVCGAGFVYPEHYKKHMHIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIVNQPQFTQHQAMEVASISTTSSTVMYNNVQDEESEIDVDNDLRSQEVSETLEKIMFKAEDLLAENVSVSSIADKDGDDDEHVITIVGDHLMKGDLDDVKYLEFADLEREDHQTLTWVTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01259368;
90% Identity
-
80% Identity
-