Agra008513.1
Basic Information
- Insect
- Aldrichina grahami
- Gene Symbol
- -
- Assembly
- None
- Location
- Contig66:1026486-1031246[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.02 0.8 9.8 2.5 1 23 364 387 364 387 0.93 2 12 0.00015 0.006 16.5 2.1 2 23 390 411 389 411 0.97 3 12 0.00011 0.0045 16.9 0.1 1 23 418 440 418 440 0.98 4 12 4e-07 1.7e-05 24.6 1.2 1 23 446 468 446 468 0.99 5 12 0.00018 0.0072 16.2 2.1 1 23 475 497 475 497 0.98 6 12 1.5e-06 6.1e-05 22.8 2.4 1 23 503 525 503 525 0.97 7 12 4.5e-05 0.0018 18.1 0.2 1 23 531 553 531 553 0.97 8 12 1.9e-05 0.00077 19.3 0.8 1 23 559 582 559 582 0.97 9 12 0.002 0.083 12.9 2.1 1 23 588 611 588 611 0.95 10 12 1e-05 0.00042 20.1 1.2 1 23 617 639 617 639 0.98 11 12 9.9e-05 0.004 17.0 0.5 1 23 645 667 645 667 0.96 12 12 0.0015 0.061 13.3 0.2 1 22 673 694 673 697 0.92
Sequence Information
- Coding Sequence
- ATGGAATCTGTTCGCTGTTATTTGTGCGACCATGAGTTCGTAGAAGGTGAAGAGCCATGGCTTATGTTTGAACAAAGACTACGTGAGGACGGACAAGTGGAATGTTCATTGGCTGATTTGTTGGGTGCAATATTGGAAAAGGATTTGGATGAGGCTATAGCACATTCTACATTGCTGTGTGACTCCTGCAATGCAGATGTTTTGGAGTATGAAAGTCTTGAAAAGCGATTTTCGCAGTTACGGGAACGAATTTTGAGTTCATACAAAGAAAATTCTACTATACAGAGTTTGTATAATTTGATACATGGAACAGTCATAAACAGTGCATCTCTGCCTCATCAAGATGATGAAAATAATAAATTGCTAATTAACCATCCTGAAGTTATCGAAAATATATCAAATCCAGAATATGCTGGTATTACGGAAATGGACTTAGTAGAGGAAGTGCAGGACGAAGAGCTGGAGTACGAAGAGGATTTACATGTAAATGTGCTACGAAAGGATCCTGTGTCAGATCATGGTGATGTTGGATTCGAAGAACATGTAAATTCCGAGATCGTATCTGATCATTTCGATTTTGCCGCGTTCAATGAACATGTTGCCCAGAATTCCCTACCTTCTGGTGTATTGAATTTATCAGATGGCCTTGTCAATTTAGAAGTTTCGGAAAAGTCCATAGATGTTCAAGACATACCACTGGATGGACAAGATATAATTATATATGATGTTAACGCAGACCATATACAACAGAGCGACTTAATTATTCAACAAGATAACGACAGTTGTGATTTGAAAAATTATGATAGTACAGAAAACGATGAACTTAATTTTATAATAAGCACAGAGATTTTCACAAGTGAAGGCAACTGTGAAGACTCCCAGCAATCCAATAACTCCGAAATAATAATGCCAAATGATAATGAACAACAAAACACTGTGACTTCTGAGACATCTACACCACCAACAGCACCTGAACCGGTTTGCAAGCAAGATGGCGAACACTTCATCTGTCTTCTTTGTGAGATATCGCCAGAATATGAACGTCATATCCTGATAGAACATTTTCAAACGTTTCACAATTCAAAATTTCATATGTGTGAACAGTGTCATCAGGGATTTGGAAAGCGACAGGACCTGAAAACACATACAGATATCGGTCATATAATAAAGTGTGAGTATTGTGAACGTACATTCACCAACACTCGTTTGTATCGCATACACAAACGTATGCATTACAATAATACCAAACCATTCGAATGTCCTGTATGCCAGAAAATGTATGTGTCCAAAGCGATATTGGAAGAACACATGAACACTCATACTGGCGTAAGACCATTTAAATGCAGTGAATGCCCCAAAGATTTTGCCTCAAAATATACGCTGCAGACACATATGAAAATACACAAGGAACGGCCGCGGCCCTACCAGTGTGATCTGTGTGACAAACGGTTTTTGAATCAACAAAATCTGAATCAACATAAAAAATTGCATGTCTCAGTCAAAGCATTCCAATGTGATGTGTGCAACAAGACATTCACCACTCAGCATAGTTTGCAAGTTCATAAAATAGTACATTCGGGCCAGAGGCCCTTTATTTGTCGCATTTGTGGAAAGTCATTTGCGAGAAGGCCGGAAATCAAAGACCATGAACGCATTCATACCGGTGAGAAACCATTCAAATGTGAATACTGTCCAATGGCCTTTGCCCAACGCACCAATTTGGCCAGTCACAAGAAGTCAACACATTTGAATGAGAAATTACACAAATGCGATCTATGTTTGCGGTCGTTTAAGCGCAAACGCTTATTAGATTATCATATACAGGCCATTCATACGGGAGAACGGCCGCATAAATGTGAAATATGTGGAGCAGGGTTTGTCTATCCTGAACATTACAAAAAACACATGCTAATACACAGTGGTAAGAAGCCATATGCATGCGAAGTGTGTGGCAAACAGTTTAACAGCCGTGACAATCGTAATGCCCATCGTTTTGTGCACAGTGATAAGAAGCCTTACGAATGTATGGAGTGTGGAGCTGGCTTTATGCGCAAACCCCTCCTTCTAACACACATGAAGCAAACGAAACACATAAACGATACAATCATTATAAATCAGCCACAATTTACTCAACAACAACCGATGGAAATTGGTAGCATCTCAACTACCTCCTCATCCGTAGAGTACAATAATTTGCACGATGAAGAATCGGAAATCGATATCGACAATGATCTAAGGTCACAAGAGGTTTCCGATGAAACCCTTGAAAAAATCATATTCAAAGCAGAAGACTTATTGGCGGAGAATGTTTCAGTTTCATCGATTACAGACAAAGATGACGACGATGATGAAAATGTGATAACGGCCGTAGGTGATCATTTAATGAAAGGTGGTCTAGACGATGTCAAATATTTGGAATTTGAAGATTTAGAACGTGATGGCCATCAAACCTTGACGTGGGTGAACATAGGAGGCGATGATAAAGTTTAG
- Protein Sequence
- MESVRCYLCDHEFVEGEEPWLMFEQRLREDGQVECSLADLLGAILEKDLDEAIAHSTLLCDSCNADVLEYESLEKRFSQLRERILSSYKENSTIQSLYNLIHGTVINSASLPHQDDENNKLLINHPEVIENISNPEYAGITEMDLVEEVQDEELEYEEDLHVNVLRKDPVSDHGDVGFEEHVNSEIVSDHFDFAAFNEHVAQNSLPSGVLNLSDGLVNLEVSEKSIDVQDIPLDGQDIIIYDVNADHIQQSDLIIQQDNDSCDLKNYDSTENDELNFIISTEIFTSEGNCEDSQQSNNSEIIMPNDNEQQNTVTSETSTPPTAPEPVCKQDGEHFICLLCEISPEYERHILIEHFQTFHNSKFHMCEQCHQGFGKRQDLKTHTDIGHIIKCEYCERTFTNTRLYRIHKRMHYNNTKPFECPVCQKMYVSKAILEEHMNTHTGVRPFKCSECPKDFASKYTLQTHMKIHKERPRPYQCDLCDKRFLNQQNLNQHKKLHVSVKAFQCDVCNKTFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFKCEYCPMAFAQRTNLASHKKSTHLNEKLHKCDLCLRSFKRKRLLDYHIQAIHTGERPHKCEICGAGFVYPEHYKKHMLIHSGKKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIINQPQFTQQQPMEIGSISTTSSSVEYNNLHDEESEIDIDNDLRSQEVSDETLEKIIFKAEDLLAENVSVSSITDKDDDDDENVITAVGDHLMKGGLDDVKYLEFEDLERDGHQTLTWVNIGGDDKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259368;
- 90% Identity
- iTF_00259950;
- 80% Identity
- -