Pper022316.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720430.1:5711592-5714837[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00017 0.042 16.0 1.1 2 23 401 422 400 422 0.97 2 16 1.4e-05 0.0035 19.4 1.1 1 23 428 450 428 450 0.98 3 16 0.0001 0.026 16.7 0.3 1 23 456 479 456 479 0.98 4 16 3.7e-05 0.0091 18.1 3.5 1 23 494 516 494 516 0.98 5 16 0.00036 0.09 14.9 1.1 1 23 549 571 549 571 0.97 6 16 7.8e-05 0.019 17.0 1.8 1 23 577 599 577 599 0.98 7 16 8.5e-06 0.0021 20.1 1.0 2 23 714 735 713 735 0.97 8 16 4.9e-06 0.0012 20.8 3.1 1 23 741 763 741 763 0.98 9 16 3.5e-05 0.0088 18.1 0.7 1 23 769 792 769 792 0.98 10 16 0.00025 0.063 15.4 1.1 1 23 803 825 803 825 0.98 11 16 0.0001 0.026 16.6 1.1 1 23 837 859 837 859 0.98 12 16 0.017 4.2 9.7 1.8 1 23 865 887 865 887 0.97 13 16 2.6e-05 0.0065 18.5 0.9 2 23 893 915 892 915 0.95 14 16 0.078 19 7.6 0.2 1 23 923 946 923 946 0.96 15 16 0.00039 0.096 14.8 0.6 2 23 955 977 955 977 0.92 16 16 0.00062 0.15 14.2 1.3 2 23 983 1004 982 1004 0.97
Sequence Information
- Coding Sequence
- ATGTCCGTCAAGCTAGACGACACTGTGTGCCGCGTATGTTTAAGTTCCTCTGGCAATATACCAATCTTCGATGGATGCGGGAAAGATGATCAATTTCGTTATTGCACTTCCTTGGAGGCCACAGAAGAGGATGGACTACCGTCCAAGCTCTGCAAGAAGTGCAACGATCACTTGAAAGTTGCCTACGACTTTCGATTTCAGGCGATTTACGCAGAGAAATACTTCAGGAAGACAATATTCCTGCCTTCGTTGAAAAAGGAAGAAGATGGAAGTGCTGCAGTTATCACCGATGAGCGCAACTGTACCGATGAGCTCGATGAGAACATGGCAGAGATTGATATGTTGCTAGCGATACACACGGAAGCTGTGGAGGAGGCTGACGATGATAATGACGACATAGACAATTCAGGATTCTACGACGATGACAGTGTTGGTGAGAATGAGAAGCAAGTAGAGATCATTGGAATGGAGACGTTCGAGAAAGAGCAACGTGAACAAAAGGAGCAAAAGGTTAAGGTTGAAATCGCTAATGTTCCTGCTCCGCTGGTGTCATCAACGGCAGGTAGTACGGGGTATGCAACATCGCTTCCTTTGGCTAGCATGCCTATGGAATCACCTCAATCCACAACGAGTCATAGCAGTGGTGTACAGCAGTCTCATGTGGATCTAAATGGGATCCAACAGTATGTGACTTCGAGCGCTTATTCCACGCAATCTGTGCAGGATCTGCGTATGGAGCATGAGTCTGGtaggtctctgcaattggaaaTTATACCAGTTATGAAGAATGACCCATCCGCGTATGACTATAATGCAACTGCAACAGTTGGCGGGGATTATGGAACTTATGAAGCGCAGACGCATATGCAGTACCAACAACCCATGCCTATGCATCTGCAATACGAGTCATCAACAGTCGCCACGCACTCCACGTTGCCTTTGCAGGAATCCACCCCGCCAACTGATAACTACGACTTCGCATATCAACCACAGTTCCCACCGTACGGCGCACAAACGACCGAAATCAGATCTGACGACCAGGTTATGCCACCAGTTCAGCAGGAGCATACAGATCAGAACGCTGCTGTACACAGGACTGAAATTCAACCAGAAATCACTGCCAAGACTGAAAATCAAGAAATTCTAAACCCAAAGCAGAAGAAGGTAAAACGTGGGGCATCCGCACGCAGAGACAAGATCGAGTGTAATATCTGCGGAAGTATCTTCACCCACTTGAACTCGTTGAAGACCCATCTCCTTAAGCATTCCGGTGAGAAGCCCTTCAAATGTGAATTCTGCGACAAAGCCTTTGCCAGAAAGACGGTCCTCAACATTCATCGGCGGTTGCATACAGGAGAGAAGCCCTACAAGTGTTCACTATGCCCAAGTGCCTATGTTACGAAGGAAGCTCTAACGCGCCATCTACAAAAGGATCATGAACAAGAAGTCGGAGCCAACTTCCGCAAGGACAAGGTGTCTTACATTTGCTCGATATGCAACAAGTCACGCTGTTCGAAGTACTCACTAGCTTCTCACATGAAGACACACTCTAATGAATCTAAGGCCCGCCGTAAGATTGTTCgcaggaaaaaagaaaagtccgCTAGCATTATCGGTCCTGTCTCATTCCGTATTCCTTTCAAGTACTCGTGCAAGATCTGTGAGAAAGGCTTCCATAACAAATGGGAGCTAAGTTCACATGCCGAGTCGCACGACCTGAATAAAACGTTCGAGTGTGACGTATGTCAGCGAACGTTCGAAAAGAAGTTTCAGTTGCTGTATCACTTGCAGACCCACGACGGTGGCGAGGAGCTAGTAAAAGCTAAGGTTCAGCCCAGTAGTGGAAAACCAGCTAAGTCGGCTGAACTTATTAAGAAAAAGGAAGAGCCACAGCAACCTAGtgagaagaaaacgaaaagaaaactaCCGGTGAGGAAGCGTCGGAAAAGGAAAGCGAAGGTTGTCAATGAAGGTAGTGGCGATGATGAGGACGCTTCTCCAATTGCAGAAGAGGGTGAGGACAATGATGATGAGAATGATAAAGACTACAAGCAGGTAACAGCGGTTAAGTCCACAAACAAGAAGTCAACACGTATGCAGCGAGAAAATCTGAAGGCATTGCGAGCGAGCAGTAAAATTGAGTGTCATATATGTGAAGCGGTGTTTACGCATCCCACCTCGCTGAAGACCCACATGCTGGTGCACTCAGGTGAGCGGCCATTCAAGTGTGATCACTGTGACAAATCGTTTGCGAGAAAAACCGTGCTCAATATCCACCGAAGACTGCACACCGGGGAGAAGCCTTATAAGTGCCCACTGTGTGATAGTGCGTGCGTCACTAAGGACGCTTTAATGcGCCACATGTCGAAAGACCATGATGACGACAGAGAAGCTGATCGAATCAAGTTCACTTGTGGAATTTGTCACAAGGCGATGGGTTCAAAATACTCTCTCCAGGCTCACATGAAACTCCATGAACAGAATTCAACGGCAGAGGGAGAAGTGACGTACTCCTGCAACACTTGTACGGAGTCTTTCGATAGCAAGTTAGACTACACAAAGCATATGGAAGTACATGATTCTCATCGAAATTTCCAATGCGACATCTGTCAGGCAACTTTTGAGAAGAAGTTCAAGCTGCTCTTCCACTTGCAGACTCACAAAATTGAGGACTTACCATGCAAAAAGTGTGGCGAAACCTTTACAATTAGAGAAAACCTCATCCACCACATCAAGTTGCAGCACATGGATCCTCGAAATATGGACTTTCAGTGTCCGCAATGCAACATTGGACAGTACGACACCCGTGATCTGAAAATGCACATGTCAAGTGCGCACGATGTGACGATGGGTGGCCTGAATTCCTGCGATATGTGTGGAGAGAGCTATTCCACCGCAGCGGAGTACTACAGACACATGCACGATAAGCATGATACAATCAGCAAAACGTGCAACGAATGCGAGAAATACTTCGACTCGAGGAAAGCTTTTGATAAGCACATACTGACACACTACATGTAG
- Protein Sequence
- MSVKLDDTVCRVCLSSSGNIPIFDGCGKDDQFRYCTSLEATEEDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEEDGSAAVITDERNCTDELDENMAEIDMLLAIHTEAVEEADDDNDDIDNSGFYDDDSVGENEKQVEIIGMETFEKEQREQKEQKVKVEIANVPAPLVSSTAGSTGYATSLPLASMPMESPQSTTSHSSGVQQSHVDLNGIQQYVTSSAYSTQSVQDLRMEHESGRSLQLEIIPVMKNDPSAYDYNATATVGGDYGTYEAQTHMQYQQPMPMHLQYESSTVATHSTLPLQESTPPTDNYDFAYQPQFPPYGAQTTEIRSDDQVMPPVQQEHTDQNAAVHRTEIQPEITAKTENQEILNPKQKKVKRGASARRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSNESKARRKIVRRKKEKSASIIGPVSFRIPFKYSCKICEKGFHNKWELSSHAESHDLNKTFECDVCQRTFEKKFQLLYHLQTHDGGEELVKAKVQPSSGKPAKSAELIKKKEEPQQPSEKKTKRKLPVRKRRKRKAKVVNEGSGDDEDASPIAEEGEDNDDENDKDYKQVTAVKSTNKKSTRMQRENLKALRASSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGSKYSLQAHMKLHEQNSTAEGEVTYSCNTCTESFDSKLDYTKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIHHIKLQHMDPRNMDFQCPQCNIGQYDTRDLKMHMSSAHDVTMGGLNSCDMCGESYSTAAEYYRHMHDKHDTISKTCNECEKYFDSRKAFDKHILTHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542376; iTF_00389801; iTF_00310451; iTF_01541594; iTF_00241667;
- 90% Identity
- -
- 80% Identity
- -