Cnem000555.1
Basic Information
- Insect
- Chalcosyrphus nemorum
- Gene Symbol
- -
- Assembly
- GCA_949716465.1
- Location
- OX454332.1:3367089-3370298[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00015 0.013 16.0 1.1 2 23 390 411 389 411 0.97 2 16 1.3e-05 0.0011 19.4 1.1 1 23 417 439 417 439 0.98 3 16 9.3e-05 0.0081 16.7 0.3 1 23 445 468 445 468 0.98 4 16 3.3e-05 0.0029 18.1 3.5 1 23 483 505 483 505 0.98 5 16 1.8e-05 0.0016 18.9 0.2 1 23 540 562 540 562 0.97 6 16 7.1e-05 0.0062 17.1 1.8 1 23 568 590 568 590 0.98 7 16 7.7e-06 0.00067 20.1 1.0 2 23 686 707 685 707 0.97 8 16 4.4e-06 0.00039 20.9 3.1 1 23 713 735 713 735 0.98 9 16 2.1e-05 0.0019 18.7 0.8 1 23 741 764 741 764 0.98 10 16 0.00017 0.015 15.9 1.2 1 23 775 797 775 797 0.98 11 16 7.8e-05 0.0068 16.9 1.1 1 23 809 831 809 831 0.98 12 16 0.016 1.4 9.7 1.8 1 23 837 859 837 859 0.97 13 16 2.1e-05 0.0018 18.7 0.3 2 23 865 887 864 887 0.95 14 16 0.21 19 6.1 0.3 1 23 895 918 895 918 0.94 15 16 0.00055 0.048 14.3 0.7 2 23 927 949 927 949 0.92 16 16 0.00056 0.049 14.2 1.3 2 23 955 976 954 976 0.97
Sequence Information
- Coding Sequence
- ATGTCCGTCAAGCTAGACGACTCTGTGTGCCGCGTTTGCTTGAGTTCCTCTGGCAATATACTCATCTTCGATGGATGCGGCAAGGACGATCAATTCCGTTACTGCACTTCTCTCGAGGCCAACGTGGACGATGGACTGCCGTCCAAGCTCTGCAAGAAGTGCAATGACCACCTTAAGGTGGCCTATGATTTTCGATTTCAGGCAATTTACGCGGAGAAATACTTTAGGAAAACTATATTCCTGCCTTCGTTCAAAAAAGAGGAGGATGGCGCACCTGCAATCGTAACTGAAGGGAACCAGTGCACTGATGAGCTAGACGAGAACATGGCGGAGATTGATATGTTGCTAGCTATTCACACGGAAGCTGTGGATGAGGCCGATGACGAAAATGATGATATGAATAACTCAGGGTTTTATGATGAAGACAGTGCGGATGAGAACGAGAAGCAAGTGGAGGTCATCGGAATGGAAACGTTCGACAAAGAGCAGCGGGAACAGAAGGAACAAAAAGTCAAAGTGGAGATTGCCAATGTTCCAGCACCACTGGTTTCCTCTTCAACAGACAGTAACGCGTATGCTCCAGCCGTACCCTTGGTGAGCATGCCCCTGGAGTCACCACATTCCATGACAAGTCATAACAGCGGTGTTCAGGTGGATCTTAACGGAATTCAACAGCAGTATACCACTTCGGGATCCTATTCCACGCAATCTGTTCAAGACCACGAGCCTGGAAGGTCCCTGCAACTGGAAATCATACCCGTGATGAAGAATGATCCATCCACGTATGACTTTAGTGGAACAGCAGTTGGTGGTAGTTACGAGGCATTCGCTGCGCAGTCACACCTGCAGTTTCAACAACCCATGTCCATACATCTTCAATATGAATCCACACCAGTGACAACACATACACCGATGCCCTTGCAGGACTCCGTGACGACAACAGAGAACTATGATTTCGGCTATCAACCACAGTTCCCACCGTTTGGTGCACAAACAACCGACCTCAGGACTGAGGATCAGAACGCCTTGCCTCCACTACAGCAGGAACAGCCCGCCACAAGAACTGAAATTCAACCTGAAACTACAACTAAGACTGAAACTCAAGAAATCCCAAACCCCAAATTGAAGAAGGCGAAACGGGGCATACCCTCACGCCGTGACAAGATCGAGTGCAATATCTGCGGAAGTATCTTTACGCATCTCAACTCGTTGAAGACACATCTGCTTAAGCATTCCGGTGAAAAACCCTTCAAATGTGAATTCTGTGACAAGGCGTTCGCACGGAAAACAGTGCTAAATATTCACCGGCGATTGCACACTGGAGAGAAGCCTTACAAGTGTTCGCTATGCCCAAGTGCCTATGTTACAAAGGAAGCTTTAACGCGTCATCTACAAAAGGATCATGAGCAAGAAGTCGGTGCCAATTTCCGCAAGGACAAGGTGTCTTACATCTGTTCCATATGTAATAAGTCCCGTTGTTCAAAATACTCTTTAGCATCTCACATGAAGACACACTCCAATGATTCCAAGGCTCGGCGTAAGGTTATTCGAAGAAAGCGAGAGAAACCGGATGGCAATGCCGCTCCAGCACCGGTGGCGGTAAATATTCCCTTCAAATACTCGTGTAAGATTTGCGATAAGGGATTCCCGAATAAGTGGGAACTTAGTACGCATGCTGAGTCGCATGACCTGCACAAGACATTCGAGTGTGATGTCTGCCAGCGAACATTCGAAAAGAAATTCCAGTTGCTCTACCACTTGCAGACGCACGATGGTGGCGAAGAGCTAGTTAAAGCCAAGGTTCTACCCAGTAGTGACAAAGTTAAATTAGCTGAATCAACGAATAAGAAGCAAGAGGAGACAAAGGAGACGAAAAGAAGGTTGCCAATGCGAAAGCGTCGAAAAAGGAGATCAAAAGCCGTTCATGATGAGAGTGACGAGgtggatggtgatgatgataacGACAAAGACTACAAGCAAGttaaaattgtagacaagaaGGTAACTCGTAATCAGAGGGAGAATTTAAAAGCCCTGCGAGCGAGTAGTAAAATTGAGTGTCATATTTGCGAGGCTGTGTTCACGCATCCCACATCGCTGAAGACCCACATGCTGGTGCATTCGGGCGAACGACCATTTAAGTGTGATCACTGCGACAAGTCATTTGCGAGGAAAACCGTTCTGAATATCCACCGAAGACTGCATACCGGAGAGAAGCCTTACAAGTGTCCACTTTGTGATAACGCTTGTGTTACCAAGGACGCTCTAATGcgGCACATGTCAAAGGACCACGACGATGACAGAGAAGCTGATCGAATCAAGTTCACTTGTGGAATCTGCCACAAAGCAATGGGTACAAAGTACTCTCTTCAGGCTCACATGAAGCTTCATGAACAGTACTCAACGGCCGATACAGAAGTAACGTATTCCTGCAATACGTGCACCGAAAGTTTCGAGACCAAACTAGAGTACACAAAGCACATGGAAGTGCATGACTCTCATCGGAACTTCCAATGCGATATTTGTCAGGCGACATTCGAGAAGAAGTTCAAGCTGCTCTTCCATCTGCAGACTCACAAAATCGAGGATTTACCATGCAAAAAGTGCGGCGAGACGTTCACAATAAGagaGAACCTCATTCAACACATCAAACTGCAGCATATGGATCCGAGAAACATGGACTTTCAGTGTCCTCAATGCAACGTGGGACAGTACGATACACGTGATCTGAAACTACACATGTCAAATGTACATGATGTTTCAATGGGCGGCTTAAATTCCTGCGATATGTGTGGGGAAACCTATTCCACTGCAGCTGAATACTACAAGCACATGCACGATAAACATGACACTATCAGCAAAACCTGCAACGAGTGCGAGAAGTACTTCGACTCAAGGAAGGCTTTTGATAAGCACATACTGACGCACTATATGTAG
- Protein Sequence
- MSVKLDDSVCRVCLSSSGNILIFDGCGKDDQFRYCTSLEANVDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSFKKEEDGAPAIVTEGNQCTDELDENMAEIDMLLAIHTEAVDEADDENDDMNNSGFYDEDSADENEKQVEVIGMETFDKEQREQKEQKVKVEIANVPAPLVSSSTDSNAYAPAVPLVSMPLESPHSMTSHNSGVQVDLNGIQQQYTTSGSYSTQSVQDHEPGRSLQLEIIPVMKNDPSTYDFSGTAVGGSYEAFAAQSHLQFQQPMSIHLQYESTPVTTHTPMPLQDSVTTTENYDFGYQPQFPPFGAQTTDLRTEDQNALPPLQQEQPATRTEIQPETTTKTETQEIPNPKLKKAKRGIPSRRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSNDSKARRKVIRRKREKPDGNAAPAPVAVNIPFKYSCKICDKGFPNKWELSTHAESHDLHKTFECDVCQRTFEKKFQLLYHLQTHDGGEELVKAKVLPSSDKVKLAESTNKKQEETKETKRRLPMRKRRKRRSKAVHDESDEVDGDDDNDKDYKQVKIVDKKVTRNQRENLKALRASSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDNACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQYSTADTEVTYSCNTCTESFETKLEYTKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPRNMDFQCPQCNVGQYDTRDLKLHMSNVHDVSMGGLNSCDMCGETYSTAAEYYKHMHDKHDTISKTCNECEKYFDSRKAFDKHILTHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223642;
- 90% Identity
- -
- 80% Identity
- -