Basic Information

Insect: Xylota segnis
Gene Symbol: -
Assembly: GCA_963583995.1
Location: OY757237.1:4166634-4169850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.6e-05 0.0043 17.4 1.1 2 23 399 420 398 420 0.97

2 16 1.4e-05 0.001 19.4 1.1 1 23 426 448 426 448 0.98

3 16 0.0001 0.0075 16.7 0.3 1 23 454 477 454 477 0.98

4 16 3.6e-05 0.0027 18.1 3.5 1 23 492 514 492 514 0.98

5 16 1.9e-05 0.0015 18.9 0.2 1 23 545 567 545 567 0.97

6 16 7.6e-05 0.0057 17.0 1.8 1 23 573 595 573 595 0.98

7 16 8.2e-06 0.00062 20.1 1.0 2 23 706 727 705 727 0.97

8 16 4.7e-06 0.00036 20.8 3.1 1 23 733 755 733 755 0.98

9 16 3.4e-05 0.0026 18.1 0.7 1 23 761 784 761 784 0.98

10 16 0.00018 0.014 15.8 1.2 1 23 795 817 795 817 0.98

11 16 0.0001 0.0077 16.6 1.1 1 23 829 851 829 851 0.98

12 16 0.017 1.3 9.7 1.8 1 23 857 879 857 879 0.97

13 16 2.2e-05 0.0017 18.7 0.3 2 23 885 907 884 907 0.95

14 16 0.061 4.6 7.9 0.8 1 23 915 938 915 938 0.96

15 16 0.00076 0.058 13.9 0.6 2 23 947 969 947 969 0.92

16 16 0.00086 0.065 13.7 2.1 2 23 975 996 974 996 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.6e-05	0.0043	17.4	1.1	2	23	399	420	398	420	0.97
2	16	1.4e-05	0.001	19.4	1.1	1	23	426	448	426	448	0.98
3	16	0.0001	0.0075	16.7	0.3	1	23	454	477	454	477	0.98
4	16	3.6e-05	0.0027	18.1	3.5	1	23	492	514	492	514	0.98
5	16	1.9e-05	0.0015	18.9	0.2	1	23	545	567	545	567	0.97
6	16	7.6e-05	0.0057	17.0	1.8	1	23	573	595	573	595	0.98
7	16	8.2e-06	0.00062	20.1	1.0	2	23	706	727	705	727	0.97
8	16	4.7e-06	0.00036	20.8	3.1	1	23	733	755	733	755	0.98
9	16	3.4e-05	0.0026	18.1	0.7	1	23	761	784	761	784	0.98
10	16	0.00018	0.014	15.8	1.2	1	23	795	817	795	817	0.98
11	16	0.0001	0.0077	16.6	1.1	1	23	829	851	829	851	0.98
12	16	0.017	1.3	9.7	1.8	1	23	857	879	857	879	0.97
13	16	2.2e-05	0.0017	18.7	0.3	2	23	885	907	884	907	0.95
14	16	0.061	4.6	7.9	0.8	1	23	915	938	915	938	0.96
15	16	0.00076	0.058	13.9	0.6	2	23	947	969	947	969	0.92
16	16	0.00086	0.065	13.7	2.1	2	23	975	996	974	996	0.97

Sequence Information

Coding Sequence: ATGTCTGTGAAGCTAGACGACAGTGTTTGCCGAGTATGTTTAAGTTCCTCGGGCAATATACAAATCTTTGATGGATGTGGGAAAGACGATCAATttcgatattgcacttcattgGAGGCCACCGAAGGCGATGGGCTGCCGTCCAAGCTGTGCAAGAAGTGCAATGATCACCTTAAGGTTGCTTATGACTTTCGTTTTCAGGCAATATACGCGGAGAAATATTTCCGGAAAACAATATTTCTGCCTTCTCTGAAGAAGGAAGAAACTGGGGGAGCTACAATTGCCACCGACGAACGCAATTGCACTGATGAGCTCGATGAGAATATGGCAGAAATTGATATGTTGCTGGCGATACACACGGAAGCGGTTGAGGAGGCCGATGATGATAACGACGATATGAATAATTCAGGATTCTACGATGACGAGAGTGGAGATGAGAACGATAAACAGGTTGAAATTATGGGAATGGAGACGTTcgagagagagaaacaaaaagagCAAAAGGTAAAGCTAGAAATTGCTAATGTTCCTCCTCCGCTTGTGTCATCATCTGCTAGCAGTACGGCGTATACTACCCCGATTCCTTTAGTTAGTGTCCCTATGGAGTCACCGCAATCTACGACAAGTCATATTAGCGGTGTGCAGCAGCACCAAGTCGATGTTAGTGGAATCCAGCAGTATACGCCGTCGAATTCTTATAACACACAATCGGGTCCAGATCTACGCATAGAGCACGAAGCTGGAAGGTCTCTGCAATTGGAAATTCTACCAGTGATGAAGAACGATCCTTCGACTTATGACTATAGTTCCACAGTTAATGTAACTGGTGGTTATGGAACTTATGATACACAAACCCATATGCAGTACCAAGAGCCGGTGTCTATGCATCTGCAGTACGATCCCACAGCAGTGACAACTCATTCGTCAATGCCTCTGCAGGAATCCGTTCCGACAACTGACAGCTATGATTTCGCATATCAGCCGCAATTCCCACCGTTCGATGCTCAAGCAACTGAAATCAATTCTGAAGTGCAGACTGCACCATCGGTCCAGCAGGAGCAATCGGATCAGATTGTTTCGGTCCAAAGCGTTGAAATTCAACATGAAACCACAACTAAGACTGAACATCAGGAAGTTCTTAACACAAAACTTAAGAAAGTCAAACGTGGCGCACCTACCCGCAGAGACAAAATCGAGTGCAATATCTGTGGCAGCGTTTTCACGCATTTGAACTCATTAAAGACGCACCTGCTTAAGCATTCTGGTGAGAAACCCTTCAAATGTGAGTTCTGCGACAAGGCTTTTGCCAGAAAAACGGTGCTCAATATTCACCGGCGTCTGCACACTGGCGAGAAGCCCTATAAATGTTCCCTGTGCCCAAGTGCCTATGTAACGAAGGAAGCTTTAACGCGGCATCTTCAGAAGGATCACGAGCAAGAAGTCGGTGCCAACTTCCGCAAGGACAAAGTGTCGTACATCTGCTCGATATGTAACAAGTCACGCTGTTCGAAATACTCCTTGGCATCTCACATGAAGACACACTCGAATGATGCCAAGGTCCGTCGTAAGATTGTTCGGAGGAAGAAGGAGAAATCTGATGGTGGTCCGATCACAGTTAATATTCCTTTCAAATACTCGTGCAAGATCTGCGATAAAGGATTCCCCAATAAGTGGGAACTGAGTACACATGCTGAGTCGCATGACCTGCATAAGACATTCGAGTGTGACGTCTGCCAGCGCACATTCGAAAAGAAGTTCCAGTTGCTGTACCACTTGCAGACCCACGATGGTGGCGAGGAGCTAGTGAAAGCTAAGGTTCAACCAAGTGGTGACAAAGTGGTTAAACCAGCTGAACCaacgaaaaagaaagaagaacccCAACAGACAAGTGAGAAGAAACCGAAAAGGAAACTACCAATGAGGAAGCGTCGGAAAAGAAAAGCAAGGAATGTATTTGAAGAGAGCGATGAAGAGGATGGTGAACCAGTCGTAGAAGGTTCCAACAATGATGATGAAAATGACAAGGACTACAAGCAGGAAACAGCGGTAAAGGCAAAAAAGACAACTCGTACACAACGCGAGAATTTGAGAGCACTGAGAGCTAATAGCAAAATTGAGTGTCATATATGCGAAGCGGTATTTACGCATCCGACGTCGCTTAAGACCCACATGTTGGTCCACTCGGGTGAGCGCCCGTTCAAGTGTGATCACTGCGATAAGTCATTTGCGAGGAAGACTGTTCTCAATATCCACCGAAGACTGCACACCGGGGAGAAGCCTTATAAGTGTCCCCTTTGTGATAGCGCCTGTGTCACTAAGGATGCCTTAATGCGCCACATGTCGAAAGACCACGATGATGATAGGGAAGCCGATAGAATCAAGTTCACCTGCGGAATCTGTCACAAGGCAATGGGTACAAAGTACTCCCTCCAGGCACACATGAAACTCCACGAGCAATACTCAACGGCAGACACAGACGTTAAGTACTCCTGTAATACATGCACGGAGTCCTTCGATAGCAAGTTAGACTACACAAAGCACATGGAGGTCCATGATTCACATCGGAATTTCCAATGCGATATATGTCAGGCGACATTCGAGAAGAAGTTCAAACTGCTCTTCCACTTACAAACACACAAAATCGAGGACTTGCCCTGTAAAAAGTGTGGCGAAACGTTCACCATAAGAGAAAACCTCATTCAACACATCAAATTGCAACATATGGATCCTAAGAATATGGACTTTCAGTGCCCACACTGCAACgttggacagtacgatacccgTGATCTGAAACTGCACATGTCAAGTGCACACGATGTGACAATGGGCGGTCTAAACTCCTGTGATCTGTGTGGGGAAAGCTATTCTACCGCAGCGGAGTACTACAAGCACATGCACGATAAACATGACACTATCAGCAAAACCTGCAACGAGTGCGAAAAGTATTTCGACTCAAGGAAAACCTTCGATAAGCACATACTGACGCACTACATGTAG
Protein Sequence: MSVKLDDSVCRVCLSSSGNIQIFDGCGKDDQFRYCTSLEATEGDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEETGGATIATDERNCTDELDENMAEIDMLLAIHTEAVEEADDDNDDMNNSGFYDDESGDENDKQVEIMGMETFEREKQKEQKVKLEIANVPPPLVSSSASSTAYTTPIPLVSVPMESPQSTTSHISGVQQHQVDVSGIQQYTPSNSYNTQSGPDLRIEHEAGRSLQLEILPVMKNDPSTYDYSSTVNVTGGYGTYDTQTHMQYQEPVSMHLQYDPTAVTTHSSMPLQESVPTTDSYDFAYQPQFPPFDAQATEINSEVQTAPSVQQEQSDQIVSVQSVEIQHETTTKTEHQEVLNTKLKKVKRGAPTRRDKIECNICGSVFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSNDAKVRRKIVRRKKEKSDGGPITVNIPFKYSCKICDKGFPNKWELSTHAESHDLHKTFECDVCQRTFEKKFQLLYHLQTHDGGEELVKAKVQPSGDKVVKPAEPTKKKEEPQQTSEKKPKRKLPMRKRRKRKARNVFEESDEEDGEPVVEGSNNDDENDKDYKQETAVKAKKTTRTQRENLRALRANSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQYSTADTDVKYSCNTCTESFDSKLDYTKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPKNMDFQCPHCNVGQYDTRDLKLHMSSAHDVTMGGLNSCDLCGESYSTAAEYYKHMHDKHDTISKTCNECEKYFDSRKTFDKHILTHYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223642;
90% Identity: iTF_01542376;
80% Identity: -