Basic Information

Insect: Xylota sylvarum
Gene Symbol: -
Assembly: GCA_905220385.1
Location: LR999957.1:148482879-148486085[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00016 0.019 16.0 1.1 2 23 397 418 396 418 0.97

2 16 1.3e-05 0.0016 19.4 1.1 1 23 424 446 424 446 0.98

3 16 9.6e-05 0.012 16.7 0.3 1 23 452 475 452 475 0.98

4 16 3.4e-05 0.0041 18.1 3.5 1 23 490 512 490 512 0.98

5 16 1.9e-05 0.0022 18.9 0.2 1 23 543 565 543 565 0.97

6 16 7.3e-05 0.0088 17.0 1.8 1 23 571 593 571 593 0.98

7 16 7.9e-06 0.00095 20.1 1.0 2 23 704 725 703 725 0.97

8 16 4.6e-06 0.00055 20.8 3.1 1 23 731 753 731 753 0.98

9 16 3.3e-05 0.004 18.1 0.7 1 23 759 782 759 782 0.98

10 16 0.00018 0.021 15.8 1.2 1 23 793 815 793 815 0.98

11 16 0.00014 0.016 16.2 1.2 1 23 827 849 827 849 0.98

12 16 0.016 1.9 9.7 1.8 1 23 855 877 855 877 0.97

13 16 2.2e-05 0.0026 18.7 0.3 2 23 883 905 882 905 0.95

14 16 0.077 9.3 7.5 0.2 1 23 913 936 913 936 0.96

15 16 0.00073 0.088 13.9 0.6 2 23 945 967 945 967 0.92

16 16 0.00083 0.099 13.7 2.1 2 23 973 994 972 994 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00016	0.019	16.0	1.1	2	23	397	418	396	418	0.97
2	16	1.3e-05	0.0016	19.4	1.1	1	23	424	446	424	446	0.98
3	16	9.6e-05	0.012	16.7	0.3	1	23	452	475	452	475	0.98
4	16	3.4e-05	0.0041	18.1	3.5	1	23	490	512	490	512	0.98
5	16	1.9e-05	0.0022	18.9	0.2	1	23	543	565	543	565	0.97
6	16	7.3e-05	0.0088	17.0	1.8	1	23	571	593	571	593	0.98
7	16	7.9e-06	0.00095	20.1	1.0	2	23	704	725	703	725	0.97
8	16	4.6e-06	0.00055	20.8	3.1	1	23	731	753	731	753	0.98
9	16	3.3e-05	0.004	18.1	0.7	1	23	759	782	759	782	0.98
10	16	0.00018	0.021	15.8	1.2	1	23	793	815	793	815	0.98
11	16	0.00014	0.016	16.2	1.2	1	23	827	849	827	849	0.98
12	16	0.016	1.9	9.7	1.8	1	23	855	877	855	877	0.97
13	16	2.2e-05	0.0026	18.7	0.3	2	23	883	905	882	905	0.95
14	16	0.077	9.3	7.5	0.2	1	23	913	936	913	936	0.96
15	16	0.00073	0.088	13.9	0.6	2	23	945	967	945	967	0.92
16	16	0.00083	0.099	13.7	2.1	2	23	973	994	972	994	0.97

Sequence Information

Coding Sequence: atgTCCGTGAAGCTAGATGACAGTGTTTGCCGAGTATGTTTAAGTTCCTCGGGCAATATACCAATCTTTGATGGATGTGGGAAAGACGATCAATTTCGTTATTGTACTTTATTGGAGgcTGATGAAGGCGATGGACTGCCGTCCAAGCTATGCAAGAAGTGCAATGATCACCTTAAGGTTGCTTATGATTTTCGATTTCAGGCAATATACGCAGAGAAATATTTCCGGAAGACAATATTTCTGCCTTCTCTGAAAAAAGAAGAGAATGGGGGACCTGCAATTGGCACCGACGAGCGCAATTGCATTGATGAGCTCGATGAAAATATGGCAGAAATTGATATGTTGTTGGCGATACGCACAGAAGCTGAGGAGGCCGATGATGACAACGACGATATGAATAATTCAGGATTCTACGATGACGACAGTGTCGATGAGAATGATAAGCAGGTTGAAATTATGGGAATGGAGACGTTCGAGAAAGAGAAACGTGAACAGAAAGAGCAAAAGGTAAAAGTAGAAATTGCTAATGTTCCTCCTCCACTTGTGTCCTCAACAGCGAATAGTACGGTGTATACTACTCCAATCCCTTTAGTTAGTATACCTATGGAGTCACCGCAATCTTCGACAAGTCATATTAGTGGTGTCCAGCAACACCAACTCGATGTTAGTGGAATGCAGTATACGACCTCGAATACGTATACCACACAATCGATGCAGGATCTACGCGAGGAACACGAAGCCGGACGATCATTGCAATTGGAAATTCTACCAGTGATGAAGAACGACCCATCCACTTATGACTATAATTCAACGGTAGCTGGTGGTTATGAAACTTATGGTTCACAAACGCATATGCAGTACCAAGAGCCGGTGTCTATGCATCTGCAATACGATCCCACATCAGTGATAAGTCATCCATCAATGCCTTTGCAGGAATCCGTTCCGACAACTGAGAACTATGACTTCACATATCAGCCACAGTTCCCAACATTCGATCCTCAACCTACCGAATTAAGATCTGATGAACAGACTATACCACCTGTTCAGCAGGAGCAATCGGATCAGACCGTTCCGGTTCAAAGAGTAGACATTCAACATGAGACCACAACTAAGACTGAACATCCTGTAATCCTtgagacaaaattaaaaaaagtcaaACGTGGCGCACCTACCCGTAGAGACAAGATCGAGTGCAATATTTGTGGCAGCATCTTCACGCATTTGAACTCATTGAAAACACACCTCCTTAAGCATTCTGGTGAGAAGCCCTTCAAATGTGAGTTCTGTGACAAGGCATTTGCTAGAAAAACGGTTCTCAATATCCATCGGCGCCTGCACACCGGAGAGAAGCCCTACAAATGTTCCCTATGCCCAAGTGCCTATGTAACGAAGGAAGCTTTAACTCGCCATCTTCAAAAGGATCACGAACAGGAAGTCGGTGCCAACTTCCGCAAGGATAAAGTGTCGTACATCTGCTCAATATGTAACAAGTCACGCTGTTCAAAATACTCGTTGGCATCTCACATGAAGACCCACTCCAATGATGCCAAAATCCGCCGTAAGATTGTTCGCAGGAAAAAAGAGAAATCCGATGGCGATGCAGTCCCAGTTAATATTCCTTTCAAATACTCGTGCAAGATCTGCGATAAGGGATTCCCTAACAAGTGGGAGCTCAGTACGCATGCTGAGTCCCATGACTTGCATAAGACATTCGAGTGTGACGTCTGCCAACGAACATTCGAAAAGAAGTTCCAGTTGCTGTATCATTTGCAGACCCACGATGGTGGCGAGGAGCTAGTGAAAGCTAAGGTTCAACCAAGTAATGACAAAGTGGTTAAACCAGCTGAACCAACGAAGAAGAAAGTAGAGCTACAGCAGACAAgtgagaagaaaacaaaaagaaaactaccAATGAGGAAACGTCGGAAACGAAAAGCAAAAGCTGTACTTGAAGAGAGCGATGAAGAGGATGGTGAACCAAGCGTAGAAGGTTCcaacaatgatgatgataatgacaaAGACTACAAGCAGGAAACTGCAGCAAAGACAAGGAAGACAACTCGTACACAGCGCGAGAATTTGAAAGCACTGAGAGCTAGTAGTAAAATTGAGTGTCATATATGCGAAGCGGTATTTACGCATCCGACGTCGCTTAAGACCCATATGCTGGTGCACTCGGGCGAACGCCCCTTCAAGTGTGATCATTGCGATAAGTCATTTGCGAGGAAGACTGTTCTCAATATCCATCGAAGACTGCACACCGGTGAGAAGCCTTATAAGTGTCCCCTTTGTGATAGCGCCTGCGTCACCAAAGATGCCTTAATGCGCCACATGTCGAAAGACCACGATGATGATAGGGAAGCCGATAGAATCAAGTTTACCTGTGGAATCTGTCACAAGGCGATGGGTACAAAGTACTCCCTCCAGGCACACATGAAACTCCACGAACAGTACTCAACGGCAGACACAGACGTTAAGTTCTCCTGTAATACTTGCACTGAGTCCTTCGATAGCAAATTAGACTACACAAAGCACATGGAGGTGCATGATTCACATCGGAATTTCCAATGCGATATATGTCAGGCGACATTCGAGAAGAAGTTCAAACTGCTCTTCCACTTACAAACACACAAAATCGAGGACTTACCCTGTAAAAAGTGTGGCGAAACGTTTACCATAAGaGAAAACCTTATTCAACACATTAAATTGCAGCATATGGATCCTAAAAATATGGACTTTCAGTGCCCGCAATGTAACATTGGACAGTACGATACTCGTGATCTGAAACTGCACATGTCAAGTGCACATGATGTGACAATGGGTGGTCTGAATTCCTGTGATCTGTGTGGGGAGAGCTATTCTACCGCAGCGGAGTACTATAAACACATGCACGATAAACATGACACAATTAGTAAAACCTGCAACGAGTGCGAGAAATATTTTGACTCGAGGAAAACCTTTGATAAGCACATACTGACGCACTACATGTAG
Protein Sequence: MSVKLDDSVCRVCLSSSGNIPIFDGCGKDDQFRYCTLLEADEGDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEENGGPAIGTDERNCIDELDENMAEIDMLLAIRTEAEEADDDNDDMNNSGFYDDDSVDENDKQVEIMGMETFEKEKREQKEQKVKVEIANVPPPLVSSTANSTVYTTPIPLVSIPMESPQSSTSHISGVQQHQLDVSGMQYTTSNTYTTQSMQDLREEHEAGRSLQLEILPVMKNDPSTYDYNSTVAGGYETYGSQTHMQYQEPVSMHLQYDPTSVISHPSMPLQESVPTTENYDFTYQPQFPTFDPQPTELRSDEQTIPPVQQEQSDQTVPVQRVDIQHETTTKTEHPVILETKLKKVKRGAPTRRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSNDAKIRRKIVRRKKEKSDGDAVPVNIPFKYSCKICDKGFPNKWELSTHAESHDLHKTFECDVCQRTFEKKFQLLYHLQTHDGGEELVKAKVQPSNDKVVKPAEPTKKKVELQQTSEKKTKRKLPMRKRRKRKAKAVLEESDEEDGEPSVEGSNNDDDNDKDYKQETAAKTRKTTRTQRENLKALRASSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQYSTADTDVKFSCNTCTESFDSKLDYTKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPKNMDFQCPQCNIGQYDTRDLKLHMSSAHDVTMGGLNSCDLCGESYSTAAEYYKHMHDKHDTISKTCNECEKYFDSRKTFDKHILTHYM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223642;
90% Identity: iTF_01541594;
80% Identity: -