Cran019660.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638385.1:51921271-51924504[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 5.4e-05 0.0053 17.4 1.1 2 23 396 417 395 417 0.97 2 16 1.4e-05 0.0013 19.3 1.1 1 23 423 445 423 445 0.98 3 16 9.5e-05 0.0094 16.7 0.3 1 23 451 474 451 474 0.98 4 16 3.4e-05 0.0034 18.1 3.5 1 23 489 511 489 511 0.98 5 16 1.6e-05 0.0016 19.1 0.4 1 23 544 566 544 566 0.97 6 16 4e-05 0.004 17.8 1.9 1 23 572 594 572 594 0.98 7 16 7.8e-06 0.00078 20.1 1.0 2 23 707 728 706 728 0.97 8 16 4.5e-06 0.00045 20.8 3.1 1 23 734 756 734 756 0.98 9 16 3.3e-05 0.0033 18.1 0.7 1 23 762 785 762 785 0.98 10 16 0.00017 0.017 15.8 1.2 1 23 796 818 796 818 0.98 11 16 7.2e-05 0.0072 17.0 1.2 1 23 830 852 830 852 0.98 12 16 0.016 1.6 9.7 1.8 1 23 858 880 858 880 0.97 13 16 2.1e-05 0.0021 18.7 0.3 2 23 886 908 885 908 0.95 14 16 0.078 7.8 7.5 0.7 1 23 916 939 916 939 0.95 15 16 0.00055 0.054 14.3 0.6 2 23 948 970 948 970 0.93 16 16 0.00082 0.081 13.7 2.1 2 23 976 997 975 997 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGAAACTGGATGACACTGTGTGCCGGGTATGTTTGAGTTCCTCGGGCAGCATACCAATCTTCGATGGTTTCGGCAAAGATGATCAATTTCGTTATTGTACTTCTCTTGAGGCCTCCGAGGAGGATGGACTTCCCTCCAAACTCTGCAAGAAATGCAATGATCACCTGAAGGTCGCCTATGATTTTCGGTTTCAGGCGATTTATGCTgagaaatattttagaaaaactaTATTCCTGCCTTCATTAAAAAAGGAAGAGGATGGTGGTACCACAATTATCTCTGATGGACGGAATTGTACCGATGAACTAGATGAGAATATGGCAGAGATTGACATGTTGTTGGCGATAAACACGGACGCTGTTGAGGAGGctgatgatgacaatgatgataTGAATAATTCGGGGTTCTACGATGATGACAGTGTGGATGATAATGAAAAACAGGTGGAGGTCATCGGCATGGAGACGTTTGAAAAAGAACAGCGCGAACGGAGGGAGCAGAAAGTTAAGATCGAAATTGCAAGTGTTCCTCCTCCATTGGTATCATCAACGGCGTCGAATGCGGTGTATGTTCCACAGCTGCCTTTAGAAAGCATGCCGATAGAATCACCGCAATCCACTACAAGTAATAGTGGCGTACAGCATTCACATACGAATATGAATGGAATTCAACAGTACACAACTTCGAGTGCATATTCGACACAATCAGTGCAAGATCTACGTATAGAAAATGAAGGGAGATCAATGCAATTGGAAATCTTACCCGTTATGAAGAATGATCCCTCCACGTACGATTATAACCAAACTGCATCGGTTAGTGGTGGTTATGAGACGTACAATGCATCGGCGGCTATGCAATACCCCGAAACAATGTCAATGCATCTGCAATATGAACCTCCATCAACCACCCAACACACATCGTTGCCTCTGCAGGAATCCGCTCCGACCACTAACAATTTTGATTTTGCATATCAAAACCAATTCCCATCCTATGGGTCGCAAGCCGTAATGAGATCTGACGAACAAGCAATTCCACGACTTTCACAGGAACAATCAGATCAGGTAGCTCCACGAACAGAAATTCAACCAGAAATCATTACAAAGACtgaaaatcaagaaattctAAACCCGAAACCGAAGAAAATAAAACGTGATGCACCCTCTCGCAGGGACAAGATCGAGTGCAATATCTGTGGAAGCGTCTTCACGCATTTGAATTCGTTGAAGACCCATCTCTTAAAGCATTCCGGTGAGAAACCGTTCAAATGTGACTTCTGTGACAAGGCGTTCGCCAGGAAGACGGTTCTTAACATTCATCGGCGGCTGCATACCGGTGAGAAGCCCTACAAGTGCTCCCTTTGTCCAAGTGCTTATGTTACAAAGGAAGCTCTGACGCGTCATCTGCAAAAGGATCATGAGCAGGAAGTGGGTGCAAATTTCCGCAAGGACAAGGTGTCGTACATCTGCTCCATATGCAACAAGTCCCGCTGTTCAAAATATTCGCTGGCGTCGCACATGAAGACCCACTCCAGCGATGCAAAAGCCCGCCGTAAGGTTGTGCgtagaaaaaaggaaaagtccGACGGCTCTAATGGTCCCGTATCTAACAATGTTCCCCTCAAATATTCGTGCAAGATTTGCAAAAAGGGGTTCCCCAACAAATGGGATTTGAATACACACGCCGAGTCGCATGACATGCATAAGACCTTCGAGTGTGACATTTGTCAGCGAACGTTCGAAAAGAAGTTTCAGTTGTTGTATCACTTGCAGACCCATGATGGTGGCGAGGAACTATCGAAAGCCAAGATGCAACCGAGCGGTGAAAAACCCGCACAACTCCAGCCCAATGAAGCAAGAGGCGTGAAGGAAGAGGCGAAGCACCAATCAACtgagaagaaaacgaaaagaaagctCCCAACGAGAAAGCGTCGGAAACGAAAAGCGAAGGTTCTGCATGACGAAAGTGATGAGGACGATGAGGCCACTGTGGTAGAAGAAGAGGACCAGAATGACGAAGACTTTAAGCAGATTATTGGGAACAAGACCACGAATAAGAAGACCGCCCGTGCTCAGCGCGAGAATCTCAAGCTACTGAGAGCGAATAGCAAAATTGAGTGTCATATATGCGAAGCGGTTTTCACGCATCCCACATCGCTGAAGACCCACATGCTAGTGCATTCGGGTGAGCGCCCATTCAAGTGTGATCACTGTGATAAGTCATTTGCAAGAAAAACCGTTCTCAATATCCACCGAAGACTGCACACCGGTGAGAAGCCTTACAAGTGTCCGCTTTGCGATAGCGCCTGCGTCACCAAAGATGCTTTAATGCGTCACATGTCAAAGGACCACGATGACGACAGAGAAGCCGATCGAATTAAGTTCACATGTGGAATCTGTCACAAGGCGATGGGTACCAAGTACTCTCTTCAAGCGCATATGAAACTCCATGAGCAGTACTCAACGGCGGACGCAGATGTTAAGTACTCTTGCAACACTTGTACAGAATCCTTTGACACTAAGTTGGACTACACCAAGCACATGGAAGTGCACGATTCTCATCGGAATTTTCAATGTGACATATGCCAGGCGACATTCGAAAAGAAGTTTAAGTTGCTCTTCCACTTACAGACGCACAAAATTGAAGATTTGCCTTGCAAAAAATGCGGAGAGACATTCACAATAAGaGAGAACCTCATCCAACACATCAAGCTGCAGCATATGGATCCACGCAATATGGACTTTCAATGCCCGCACTGCAACGTTGGACAGTACGACACTCGTGATCTAAAGCTGCATATGCTAAACGTACATGATGTTACCATGGGCGGCCTAAATTCCTGTGATCTATGTGGCGAGAGCTATTCCACAGCAGCGGAGTACTACAAACACATGCACGAAAAACATGACACAATCAGTAAAACTTGCAATGAGTGTGAGAAGTACTTTGATTCGAGGAAAACCTTTGATAAGCACATACTGACGCATTACATGTAG
- Protein Sequence
- MSVKLDDTVCRVCLSSSGSIPIFDGFGKDDQFRYCTSLEASEEDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEEDGGTTIISDGRNCTDELDENMAEIDMLLAINTDAVEEADDDNDDMNNSGFYDDDSVDDNEKQVEVIGMETFEKEQRERREQKVKIEIASVPPPLVSSTASNAVYVPQLPLESMPIESPQSTTSNSGVQHSHTNMNGIQQYTTSSAYSTQSVQDLRIENEGRSMQLEILPVMKNDPSTYDYNQTASVSGGYETYNASAAMQYPETMSMHLQYEPPSTTQHTSLPLQESAPTTNNFDFAYQNQFPSYGSQAVMRSDEQAIPRLSQEQSDQVAPRTEIQPEIITKTENQEILNPKPKKIKRDAPSRRDKIECNICGSVFTHLNSLKTHLLKHSGEKPFKCDFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSSDAKARRKVVRRKKEKSDGSNGPVSNNVPLKYSCKICKKGFPNKWDLNTHAESHDMHKTFECDICQRTFEKKFQLLYHLQTHDGGEELSKAKMQPSGEKPAQLQPNEARGVKEEAKHQSTEKKTKRKLPTRKRRKRKAKVLHDESDEDDEATVVEEEDQNDEDFKQIIGNKTTNKKTARAQRENLKLLRANSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQYSTADADVKYSCNTCTESFDTKLDYTKHMEVHDSHRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHIKLQHMDPRNMDFQCPHCNVGQYDTRDLKLHMLNVHDVTMGGLNSCDLCGESYSTAAEYYKHMHEKHDTISKTCNECEKYFDSRKTFDKHILTHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223642;
- 90% Identity
- -
- 80% Identity
- -