Basic Information

Insect: Brachypalpus laphriformis
Gene Symbol: -
Assembly: GCA_945910015.1
Location: CAMDTZ010000366.1:356563-360353[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00012 0.049 16.0 1.1 2 23 399 420 398 420 0.97

2 16 1e-05 0.0042 19.4 1.1 1 23 426 448 426 448 0.98

3 16 7.5e-05 0.03 16.7 0.3 1 23 454 477 454 477 0.98

4 16 2.7e-05 0.011 18.1 3.5 1 23 492 514 492 514 0.98

5 16 1.5e-05 0.0058 18.9 0.2 1 23 547 569 547 569 0.97

6 16 5.7e-05 0.023 17.0 1.8 1 23 575 597 575 597 0.98

7 16 6.2e-06 0.0025 20.1 1.0 2 23 706 727 705 727 0.97

8 16 3.6e-06 0.0014 20.8 3.1 1 23 733 755 733 755 0.98

9 16 2.6e-05 0.01 18.1 0.7 1 23 761 784 761 784 0.98

10 16 0.00014 0.055 15.8 1.2 1 23 795 817 795 817 0.98

11 16 5e-05 0.02 17.2 1.4 1 23 829 851 829 851 0.98

12 16 0.013 5.1 9.6 2.0 1 23 857 879 857 879 0.97

13 16 0.17 68 6.1 0.3 8 23 887 903 887 903 0.94

14 16 0.06 24 7.5 0.2 1 23 911 934 911 934 0.96

15 16 0.00057 0.23 13.9 0.6 2 23 943 965 943 965 0.92

16 16 0.00045 0.18 14.2 1.3 2 23 971 992 970 992 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00012	0.049	16.0	1.1	2	23	399	420	398	420	0.97
2	16	1e-05	0.0042	19.4	1.1	1	23	426	448	426	448	0.98
3	16	7.5e-05	0.03	16.7	0.3	1	23	454	477	454	477	0.98
4	16	2.7e-05	0.011	18.1	3.5	1	23	492	514	492	514	0.98
5	16	1.5e-05	0.0058	18.9	0.2	1	23	547	569	547	569	0.97
6	16	5.7e-05	0.023	17.0	1.8	1	23	575	597	575	597	0.98
7	16	6.2e-06	0.0025	20.1	1.0	2	23	706	727	705	727	0.97
8	16	3.6e-06	0.0014	20.8	3.1	1	23	733	755	733	755	0.98
9	16	2.6e-05	0.01	18.1	0.7	1	23	761	784	761	784	0.98
10	16	0.00014	0.055	15.8	1.2	1	23	795	817	795	817	0.98
11	16	5e-05	0.02	17.2	1.4	1	23	829	851	829	851	0.98
12	16	0.013	5.1	9.6	2.0	1	23	857	879	857	879	0.97
13	16	0.17	68	6.1	0.3	8	23	887	903	887	903	0.94
14	16	0.06	24	7.5	0.2	1	23	911	934	911	934	0.96
15	16	0.00057	0.23	13.9	0.6	2	23	943	965	943	965	0.92
16	16	0.00045	0.18	14.2	1.3	2	23	971	992	970	992	0.97

Sequence Information

Coding Sequence: ATGTCCGTGAAGCTAGACGACTCTGTGTGCCGCGTTTGTTTGAGTTCCTCGGGCAACATACCCATCTTCGATGGGTGCGGGAAGGACGACCAATTCCGATACTGTACTTCCCTGGAGGTTGTGGCGAACGAAGACGATGGTCTGCCCTCAAAGCTCTGCAAGAAGTGCAACGACCACCTGAAGGTTGCCTACGACTTTCGTTTCCAGGCAATTTATGCAGAGAAGTACTTCAGGAAGACGATATTCCTGCCGTCGTTGAAAAAGGAGGAAGATGGAGGGCCTGCGATAGTAATCGATGGGCGCCAGTGCACTGATGAACTGGACGAGAACATGGCAGAGATTGACATGCTGCTGGCGATACATACGGAAGCTGTGGAGGAGGCGGACGACGAAAATGACGACATGAATAACTCGGTATTCTACGACGATGACAGCGTCGATGAGAACGAGAAGCAGGTGGAGATCATTGGTATGGACACGTTTGAGAAGGAACAGCGTGAACAAAAGGAGCAGAAGGTGAAAATCGAGATTGCTAATGTTCCTCCACCTCTGGTATCTTCGTTGGCTGGTAGTACAGCGTATGCTTCACCTATCCCTTTAGTCAGCATGCCATTGGAATCACCGCAGTCCACGACGAGCCATAATAGCGGCGTGCAGGTGGACCTAAATGGAATCCAACAGTATGCCACTTCAGGTTCGTATTCTACCCAATCTGGGCAGGACTTGGAAGCTGGGCGACCTCTTCAATTGGAAATCATACCGGTGATGAAGAATGATCCATCTACGTACGACTATAATGGAACTGCAACGCTTGGCGGGGGCTATACAAATTACAGCGGGCAGACACACCTGCAATACCAACAACCCATGTCTATGCACCTTCAGTACGAGCCCACCCCAGTCACCACCACACATTCATCATTGCCTTTGCAGGAATCTGTTCCACCGACGACGGATAACTATGACTTTGCATATCAGCCACAGTTCCCACCATTTGGCGCAAGCGAAACCGTCATCAGGCCTGAGGAGCAGTCGTTGTCACAAGTTCACCAAGAGCTGTTGGAGCAGACCGTTGCATCCGCGAGGACGGAAATTCAACCCGAAACCGCCACAAAGACTGAAAACCAGGGAATCCGAAACCCGAAACTGAAGAAGGTCGTGAAACGTGGGCCTTCCACCCGCCGAGACAAGATcgagtgcaatatctgcggaagtatcttcacgcatttgaactcattgaagacgcaccttctcaagcattctggtgagaagcccttcaaatgtgagttctgcgacaaagcgttcgcgcggaaaacggtcctcaacatccatcgacggttgcacaccggagagaagccttacaagtgttccctttgcccaagtgcctatgtaacgaaggaagctctaacaCGCCATCTACAAAAGGATCATGAACAAGAAGTCGGTGCCAACTTCCGCAAAGACAAGGTGTCTTACATCTGCTCTATATGCAACAAGTCCCGCTGCTCGAAGTACTCACTTGCATCTCACATGAAGACACACTCAAATGATGCCAAGGCCCGCCGTAAGGTCGTTCGCAGGAAAAAGGAGAAGTCCGATGGCAGTGGCGCTCCAGTTGCGGTAAATATTCCGTTCAAATACTCGTGCAAAATCTGCGACAAGGGATTCCCCAATAAATGGGAATTGAGTACGCATGCTGAGTCCCATGACCTGCATAAAACATTCGAATGTGATGTCTGCCAGCGAACGTTCGAAAAGAAATTTCAGCTGCTATATCACTTGCAGACGCACGATGGTGGTGAAGAGCTAGTGAAAGCTAAGGTTCAACCCAGTAGTGATAAAGCCGTTAAACCCGTTGAAGCAATAAAGAAGAAAGAAGAGCCCCAACAGACCAGTGAGAAGAAAAGAAAACTGGCTATGAGAAAGCGGCGGAAAAGAAGAGCGAAGCCTGTCCATGATGATAGTGATGACGATGATAGTGCGCCGGTTATAGAAGAGGGCGACGGCAATGATGATAAGAATGACAAGGACTACAAGCAGGTCAAGTCTACAAATAAGAAGACAACTCGTACACAGCGTGAGAACTTGAAAGCACTGCGAGCGAGTAGTAAAATTGAGTGTCATATATGTGAAGCTGTGTTCACGCATCCCACCTCGCTAAAGACCCACATGCTGGTGCATTCGGGGGAGCGGCCATTTAAATGTGATCACTGCGATAAGTCATTTGCAAGGAAGACCGTTCTAAATATCCACCGAAGACTGCACACCGGAGAGAAGCCTTATAAATGTCCCCTCTGTGATAGCGCTTGCGTCACCAAAGATGCTCTAATGCGCCACATGTCAAAGGACCACGACGACGACAGGGAAGCTGACCGAATCAAGTTCACCTGCGGAATCTGTCACAAGGCAATGGGTACAAAGTATTCTCTTCAGGCTCACATGAAACTCCACGAACAGTACTCAACGGCAGATACAGAAGTAAAATACTCCTGCAACACTTGCACCGAGTCCTTCAACAGTAAGTTAGATTATACCAAGCACATGGAGGTGCACGATTCTCACAGGAATTTTCAATGCGACATATGTCAGGTGACATTCGAGAAGAAGTTCAAGCTGCTCTTCCACTTACAGACTCACAAAATTGAGGACCTACCCTGCAAAAATTTTACGTTCAGAGAAAACCTCATCCAACACATAAAAGTTCAGCATATGGATCCCAGGAATATGGACTTTCAGTGTCCTCAATGCAACATTGGACAGTACGATACTCGTGATCTAAAACTGCACATGTCAAGTGCACACGATGTGTCAATGGGCGGCCTTAATTCCTGCGATCTCTGTGGAGAGAGCTATTCTACTGCAGCGGAGTACTACAAACACATGCACGACAAACATGACACAATCAGCAAAACCTGCAACGAGTGCGAAAAATATTTTGATTCAAGGAAAGCTTTTGATAAGCATATACTGACGCATTACATGTAG
Protein Sequence: MSVKLDDSVCRVCLSSSGNIPIFDGCGKDDQFRYCTSLEVVANEDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSLKKEEDGGPAIVIDGRQCTDELDENMAEIDMLLAIHTEAVEEADDENDDMNNSVFYDDDSVDENEKQVEIIGMDTFEKEQREQKEQKVKIEIANVPPPLVSSLAGSTAYASPIPLVSMPLESPQSTTSHNSGVQVDLNGIQQYATSGSYSTQSGQDLEAGRPLQLEIIPVMKNDPSTYDYNGTATLGGGYTNYSGQTHLQYQQPMSMHLQYEPTPVTTTHSSLPLQESVPPTTDNYDFAYQPQFPPFGASETVIRPEEQSLSQVHQELLEQTVASARTEIQPETATKTENQGIRNPKLKKVVKRGPSTRRDKIECNICGSIFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALTRHLQKDHEQEVGANFRKDKVSYICSICNKSRCSKYSLASHMKTHSNDAKARRKVVRRKKEKSDGSGAPVAVNIPFKYSCKICDKGFPNKWELSTHAESHDLHKTFECDVCQRTFEKKFQLLYHLQTHDGGEELVKAKVQPSSDKAVKPVEAIKKKEEPQQTSEKKRKLAMRKRRKRRAKPVHDDSDDDDSAPVIEEGDGNDDKNDKDYKQVKSTNKKTTRTQRENLKALRASSKIECHICEAVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGICHKAMGTKYSLQAHMKLHEQYSTADTEVKYSCNTCTESFNSKLDYTKHMEVHDSHRNFQCDICQVTFEKKFKLLFHLQTHKIEDLPCKNFTFRENLIQHIKVQHMDPRNMDFQCPQCNIGQYDTRDLKLHMSSAHDVSMGGLNSCDLCGESYSTAAEYYKHMHDKHDTISKTCNECEKYFDSRKAFDKHILTHYM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01223642;
90% Identity: -
80% Identity: -