Pnir047742.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010004118.1:21513-23453[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-12 2.2e-08 35.5 0.0 1 35 86 121 86 127 0.92
Sequence Information
- Coding Sequence
- ATGCGTGCTTCGGCGTCTGATGCGAAAGCTAAGGGAATAGCGAAGCAGCTCGACTCGCGGATCACCAAAATTCGTGCGGCACGAGGAACTTTCGAAATGAAGCAACTTTGCGTGTGTCTTTCAGCCCCTCTTAGCCTCCCGTGCTTTCGCATATTAGCCAAGTTGTTGGAATCATCCCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCAGCTGACTACTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACGCGGCAAGAGCTGCAGGAGGCCATCGAGGCCGTGGTCACCCAGAAGATGCGCTTCACCCAGGCCTCGAGCAAGTACGGCATACCCAAGGGCACGCTCTACGACAACATCCTCGGCAAGTCCAAGAGGATGATGGTGCTCGAGGAGGCGGGCCTCGACAACGCCGAGGAAACGGCCGTGCTCGAGTTCTGCTGCGACATCAGCGTCAGCCCCTATAACCGCCGGACGAAAAAGTCCCTCAACGCGATCCTCGCGTTCGTGGAGAAGCTGCGGCGGCAGCGCGACCCCAGCTTCTCCTTCACCGGGCTCTCCGGCTTCCGCTGGTGGTGGGCGTTCTGCAAGAAGCACGGCATCGTCTCGCTTTACTTTAACGACGAGAACGACACCGAATGA
- Protein Sequence
- MRASASDAKAKGIAKQLDSRITKIRAARGTFEMKQLCVCLSAPLSLPCFRILAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAGLDNAEETAVLEFCCDISVSPYNRRTKKSLNAILAFVEKLRRQRDPSFSFTGLSGFRWWWAFCKKHGIVSLYFNDENDTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00845206; iTF_01523954; iTF_00692821; iTF_00691847; iTF_00712768; iTF_00286247; iTF_01380524; iTF_00738993; iTF_00714293; iTF_00143798; iTF_00969494; iTF_00969495; iTF_01036121; iTF_00734490; iTF_01381243; iTF_00304989; iTF_01428190;
- 90% Identity
- -
- 80% Identity
- -