Wpum021893.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- -
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000144.1:708614-710494[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-12 1.8e-08 35.4 0.0 1 35 97 132 97 138 0.92
Sequence Information
- Coding Sequence
- ATGAGAAAGGCTAAGGGAATAGCGAAGCAAGTCGACTCGCGGATCATCAAAATTCATGCGCCACGGGGAACTTTCAAAATGAAGCAACTTTACGTGTGTCTTTCAGTCTCTTTTAGACTCCTGTGCTCTCGTATATTAGTAAAGTTCCGCGTTATTGCCAAAATACTTCCACATGCTTATTCATTTCAAGCCAAGTTGTTGGAATCATCCCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCAGCTGACTACTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACGCGGCAAGAACTGCAGGAAGCCATCGAAGCTGTGGTCACCCAGAAGATGCGCTTCACCCAAGCCTCCAGCAAGTATGGAATACCCAAGGGCACGCTTTACGACAACATCCTCGGCAAGTCCAAAAGAATGATGGTGCTGGAAGAGGCGGGCCTCGACAACGCTGAGGAAACGGCCGTGCTTGAGTTCTGCTGTGACATTAGCGTTAGCCCCTATAACCGCCGGACGAAAAAGTCCCTCAACGCGATCCTTAATTTCGTGGAGAAGCTGAGGCGTCAGCGCGATCCCGGCTTCTCCTTTACCGGCCTCTCCGGCTTTCGCTGGTGGTGGGCTTTCTGCAAGAAGCACGGCATCGTCTCGCTTTACTTTAACGATGAAAATGATAACGAATGA
- Protein Sequence
- MRKAKGIAKQVDSRIIKIHAPRGTFKMKQLYVCLSVSFRLLCSRILVKFRVIAKILPHAYSFQAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAGLDNAEETAVLEFCCDISVSPYNRRTKKSLNAILNFVEKLRRQRDPGFSFTGLSGFRWWWAFCKKHGIVSLYFNDENDNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219003;
- 90% Identity
- -
- 80% Identity
- -