Abak013073.1
Basic Information
- Insect
- Apocrypta bakeri
- Gene Symbol
- -
- Assembly
- GCA_018906985.1
- Location
- JACCIA010000025.1:361372-362218[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-12 3.5e-09 36.0 0.0 1 35 40 75 40 82 0.92
Sequence Information
- Coding Sequence
- ATGGGAGCATATCGAGCCGCTAAGCTGTTGGAATCTTCCCACGCTTGGCTCGGAGCCTCTACCTCCAGCATAGCAGCTGACTACTCGAGCCTGCTGAAGCTGAAGGCGCCGACGTGGACTCGACAAGAGCTGCAGGAGGCCATTGAGGCGGTGGTCACGCAAAAGATGCGCTTCACCCAGGCATCGAGCAAGTACGGAATACCGAAAGGGACGCTCTATGACAACATCCTCGGCAAGTCCAAGCGGATGATGGTACTCGAGGAGGCCGGTCTTGAACTGGCCGAGGAGACGGCAGTACTTGAATTCTGCTGCGACATCAGTGTCAGTCCATATAATCGAAGAACGAAAAAGTCACTTCAAGCCATCCTCGGATTCGTCGAGAAGCTCAGACGACAGCGCGAGCCAAACTTCTCGTTCACCGGACTCTCGGGATTTCGATGGTGGTGGGCATTCTGTAAAAAACACGGCATTGTGTCGCTTTACTTCAACGACGAGAACGACAATAATGATCATTCGTCTTCCAACTGA
- Protein Sequence
- MGAYRAAKLLESSHAWLGASTSSIAADYSSLLKLKAPTWTRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEAGLELAEETAVLEFCCDISVSPYNRRTKKSLQAILGFVEKLRRQREPNFSFTGLSGFRWWWAFCKKHGIVSLYFNDENDNNDHSSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219003;
- 90% Identity
- iTF_01190244;
- 80% Identity
- -