Stex007519.1
Basic Information
- Insect
- Sycophila texana
- Gene Symbol
- -
- Assembly
- GCA_035582955.1
- Location
- JAWWEN010000048.1:6944005-6944964[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-12 8.5e-09 35.8 0.0 1 35 60 95 60 101 0.92
Sequence Information
- Coding Sequence
- ATGATAAATAACACGGCTTATAAGTCGGGGCAGAGCAAAAAGAAGACTAACGATCTCTTGTACTTTTGTCTGTTTCAGGCCAAGTTGTTGGAATCGTCCCACGCTTGGCTCGGAGCCTCCACCTCCAGTATAGCAGCTGACTACACGGGTCTGCTGAAGCTGAAGGCGCCTACGTGGACGCGTCAAGAGCTGCAGGAGGCGATCGAGGCGGTGGTCACGCAGAAGATGCGCTTCACCCAGGCGTCCAGCAAGTACGGCATCCCGAAGGGCACCCTCTACGACAACATCCTCGGCAAGAGCAAGAGGATGATGGTGCTGGAGGAGGTGGGCCTGGACGCCGCCGAGGAGACCGCCGTCCTCGAGTTCTGCTGCGACATCAGCGTTAGCCCCTACAACCGTCGGACTAAAAAGTCCCTGGGGGCAATTCTCGGCTTCGTCGAGAAGCTCAGGCGGCAGCGCGAGCCTGGCTTCACCTTCACCGGCCTCTCGGGCTTTAGGTGGTGGTGGGCCTTCTGCAAGAAGCACGGCATCGTCTCGCTCTACTTCAACGACGAGAACGACAACGAGTGA
- Protein Sequence
- MINNTAYKSGQSKKKTNDLLYFCLFQAKLLESSHAWLGASTSSIAADYTGLLKLKAPTWTRQELQEAIEAVVTQKMRFTQASSKYGIPKGTLYDNILGKSKRMMVLEEVGLDAAEETAVLEFCCDISVSPYNRRTKKSLGAILGFVEKLRRQREPGFTFTGLSGFRWWWAFCKKHGIVSLYFNDENDNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219003;
- 90% Identity
- iTF_01190244;
- 80% Identity
- iTF_01380524;