Prap014057.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990586.1:10888958-10895821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-11 8.1e-08 32.0 0.0 4 38 160 195 157 200 0.89 2 4 3.7e-14 3.3e-11 42.9 0.1 1 39 211 249 211 252 0.95 3 4 6.2e-16 5.4e-13 48.6 0.0 2 45 267 311 266 311 0.96 4 4 2.5e-18 2.2e-15 56.2 0.0 1 43 318 361 318 363 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTTACGGCCCGTCTCAAGTAAAGTGCGAGCCGCCTTCAGACGAAGAAGACAACTGTCAGTACGGGAACTATTTATACGAAACACACAAGCCATTAAACACAGAGTATGACGGAGATGTGTCAGCTGAAATGTTGGATCAATTACAGTTCTCATCAGAGCTGGTGGCGGTGCCAGCGGCGCCGGCTGCGACTCCCGTGTGCGCCGCATTGCCCGCCCCGAGGGAGGCTTCGCTGGCTCTGCTCGAGCCTGTCAAGACCCACCTGATGCAGGGTTCGCAACTGATGGAAAAACATATCTCATTATCGAGTGCCACAGACATACTGGATACATCTGACTTTGCACCTCTTCTTCATATTAAGGATGAACCGCTTTCGGAGGGTGAAGGTCAGCAGCTGAGTGGTGACGAAGCGAGTGAGGGTTCCACTCCGGAGACGAGTGGACGAGGAGCAGCCAAGGGCTGGTCTCCGCTGGACATGGAGAAAGCCCTCGACGCGCTCAAGAATCATCATATGAGTCTCACCAAGGCCTCCTCCACCTACGGAATACCTTCCACCACGTTGTGGCAAAGGGCCCATCGCATGGGCATCGACACGCCCAAGAAAGAGGGCTCCTCCAAGTCCTGGACCGAAGACGACCTCAAGGCAGCCCTGCACGCACTCAGGACTGGAGCCATCTCCGCCAATAAGGCCAGCAAAGCATACGGTATACCTAGCAGCACCCTGTACAAGATCGCCCGTCGCGAGGGCATCCGCTTGGCGGCACCCTTCAACGCCGCGCCCACGTCTTGGCGAAGAGCTGACCTGCAGAGGGCTCTCGACGCCATCCGTTGTGGCGCCGCCTCCGTGCAGCGGGCCGCTTCTCACTTCGGAATACCCACTGGCACTTTGTACGGACGGTGTAAGCGAGAGGGCATCGAGTTGTCCCGCTCTAACCCCACACCGTGGTCTGAGGACGCCATGGGGGAAGCTCTCGAAGCTGTCAGAGTTGGTCAGATGTCGATAAACCAAGCGGCCATCCACTTTAACCTTCCATACTCTTCATTGTACGGTCGTTTCAAGAGATGCAAGTATCAGGTGACACAGGAACACCAAGAGTATAAATCCCATGAGATCCGCCCGGAGGATATTCAAGAGCAGAGTCACCCTCAGGAGTACTTCCCGAGCTTCGGCTCTGATTCATACTTGAGCGAAGTGACATCTATGCAGAGCGTGCAACAACATTACAGCCAAGCGATGTACTACACGCAGTGCCACGTGACCAGCTGA
- Protein Sequence
- MPGYGPSQVKCEPPSDEEDNCQYGNYLYETHKPLNTEYDGDVSAEMLDQLQFSSELVAVPAAPAATPVCAALPAPREASLALLEPVKTHLMQGSQLMEKHISLSSATDILDTSDFAPLLHIKDEPLSEGEGQQLSGDEASEGSTPETSGRGAAKGWSPLDMEKALDALKNHHMSLTKASSTYGIPSTTLWQRAHRMGIDTPKKEGSSKSWTEDDLKAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRADLQRALDAIRCGAASVQRAASHFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQVTQEHQEYKSHEIRPEDIQEQSHPQEYFPSFGSDSYLSEVTSMQSVQQHYSQAMYYTQCHVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01203171; iTF_01204806; iTF_01205623; iTF_01202394; iTF_01203964; iTF_00430564; iTF_00878793;
- 90% Identity
- iTF_01202394;
- 80% Identity
- -