Pmel015504.1
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- -
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000114.1:1205628-1209746[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.3e-11 1e-07 32.2 0.0 4 38 116 151 113 156 0.89 2 4 6.8e-14 8.4e-11 42.1 0.1 1 39 167 205 167 208 0.94 3 4 2e-16 2.5e-13 50.2 0.0 2 45 223 267 222 267 0.96 4 4 2.3e-18 2.8e-15 56.4 0.0 1 43 274 317 274 319 0.95
Sequence Information
- Coding Sequence
- ATGAAATCGGTGTATAATCAGTTCTCATCAGAACTGGTGGCGGTACCAGCGGCACCGGCTGCAACTCCCGTATGCGCCGCATTACCCGCCCCGAGGGAGGCTTCGCTCGCTCTGCTCGAGCCTGTCAAGACCCACCTGATGCAGGGTTCGGAGCTGATGGAAAAACACATCTCACTATCGAGTGCCACAGACATAATTGACACTTCTGACTTTGCACCTCTTCTTAATATTAAGGATGAACCACTTTCGGAGGGGGAAGGTCAGCAGCTGAGCGGCGATGAAGCGAGTGAGGGTTCCACTCCGGAGACGAGCGGACGAGCAGCAGCCAAGAGCTGGTCTCCGTTGGACATGGAGAAAGCCCTTGACGCGCTCAAGAACCATCATATGAGTCTTACCAAGGCCTCCTCAACCTACGGCATACCTTCTACCACGCTGTGGCAAAGGGCCCATCGTATGGGCATCGACACTCCCAAGAAGGAGGGCTCCTCCAAGTCCTGGACCGACGACGACCTCAAGGCGGCCCTGCACGCGCTCAGGACTGGAGCCATCTCCGCCAACAAGGCCAGCAAGGCATACGGTATACCCAGCAGCACCCTGTACAAGATAGCCCGTCGGGAGGGAATCCGCTTGGCGGCACCCTTCAACGCCGCGCCCACGTCTTGGCGAAGAGCCGATCTGCAAAGGGCTCTCGACGCCATCCGTTGTGGCGCAGCCTCCGTGCAGCGGGCCGCTTCTCACTACGGAATACCCACCGGCACTTTGTACGGGCGGTGTAAGCGAGAGGGCATCGAGTTGTCCCGCTCTAACCCCACACCGTGGTCTGAGGACGCCATGGGGGAAGCTCTCGAAGCTGtcagAGTCGGTCAGATGTCGATAAACCAAGCGGCCATCCATTTCAACCTTCCCTACTCTTCGTTGTACGGTCGTTTCAAGAGATGCAAGTATCAGGTGACTCAGGAACACCGAGAGTATAAATCCCAAGAGAACCGGCCGGAGGATATTCGAGAGCAGAGTCACCCTCAGGAGTACTTCCCCAGCTTAGGGTCGGATTCGTACTTGAGCGAAGTGACATCTATGCAGAACGTGCAACAGCACTACAGCCAAGCGATGTACTACTCTCAGTGCAACGTCACCAGCTGA
- Protein Sequence
- MKSVYNQFSSELVAVPAAPAATPVCAALPAPREASLALLEPVKTHLMQGSELMEKHISLSSATDIIDTSDFAPLLNIKDEPLSEGEGQQLSGDEASEGSTPETSGRAAAKSWSPLDMEKALDALKNHHMSLTKASSTYGIPSTTLWQRAHRMGIDTPKKEGSSKSWTDDDLKAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRADLQRALDAIRCGAASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQVTQEHREYKSQENRPEDIREQSHPQEYFPSLGSDSYLSEVTSMQNVQQHYSQAMYYSQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206478;
- 90% Identity
- iTF_01202394;
- 80% Identity
- -