Lari006681.1
Basic Information
- Insect
- Leptophobia aripa
- Gene Symbol
- -
- Assembly
- GCA_951799465.1
- Location
- OX637268.1:7960884-7967559[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-11 4.5e-08 32.8 0.0 4 39 161 197 158 201 0.89 2 4 3.8e-14 7.3e-11 41.7 0.1 1 39 212 250 212 253 0.94 3 4 9.8e-17 1.9e-13 50.0 0.0 2 45 268 312 267 312 0.96 4 4 1.3e-18 2.4e-15 56.0 0.0 1 43 319 362 319 364 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGCCCGTCTCGAGTTAAGTGCGAGCCGCCTTCGGATGAAGAAGAATACGGAATTTATTACGGAACGCAAAAGCCAGTCAAATTCAGTACGCATTATGACGGTGATGTGTCAGCTGAAATGTTGGATCAATTACAGTTCTCGGCGGAACTGGTGGCGGTGCCAGCGGCGCCGGCTGCCATCCCCGTGCGTGCCGCCCTGACGGCCCCGCCGGCCCCGAGGCAGGCATCGCTGGCTCTACTCGAGCCGGTCAAGACTCACCTGATGCAGGGTTCGGAGCTGATGGAGAAACATCTGTCGTTAACGAGTGCCAACGACATAATTGACACTTCTGACTTCGCGCCtcttcttaatattaaagatgAACCACTTTCGGAGGGCGaaGGCCAGCATCTGAGCGGCGATGAAGCAAGTGAGGGTTCCGCTCCAGAGACGAGCGGCCGTGGAACGGCCAAGAGCTGGTCTCCACTCGACATGGAGAAAGCTTTGGATGCCCTCAAAAATCAGCACATGAGTCTTACCAagGCCTCGTCGACGTACGGCATCCCTTCCACGACGCTGTGGCAACGCGCTCATCGCCTGGGCATCGACACGCCCAAGAAGGAAGGCTCCTCTAAATCCTGGACGGACGAGGACCTCAAGGCGGCCCTGCACGCGCTCCGCACCGGCGCCATCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATCCCCAGCAGCACCCTTTACAAGATCGCCCGCCGCGAGGGCATCCGCCTCGCGGCCCCGTTCAACGCGGCGCCCACGGCCTGGCGAAGGGCCGACCTGCAGAGAGCCCTGGACGCCATCCGCTGCGGCGCCGCCTCCGTTCAGAGGGCTGCCTCGCACTACGGCATCCCCACGGGCACTCTGTACGGGCGGTGTAAACGAGAGGGCATCGAGCTGTCCCGCTCTAACCCCACGCCGTGGTCGGAAGACGCCATGGGCGAAGCTCTCGAAGCAGTCAGAGTGGGTCAGATGTCGATAAACCAAGCAGCGATCCATTTCAACCTGCCCTATTCCTCTTTGTATGGGCGGTTCAAGAGGTGCAAGTACCAAACCGCACAGGAACCCCAACAGTCTCAAGAGCACCCGGAAGAGGTCCAACCGAGTGCACCTCAGGAGTACTTCCCCAGCTTCGGAGCAGATGCGTTCTTGAGTGAAGTGACATCTATGCACCACGTGCAGCAACACTACAGCCAAGCGATGTACTACACGCAGTGCAACGTCACCAGCTGA
- Protein Sequence
- MPGYGPSRVKCEPPSDEEEYGIYYGTQKPVKFSTHYDGDVSAEMLDQLQFSAELVAVPAAPAAIPVRAALTAPPAPRQASLALLEPVKTHLMQGSELMEKHLSLTSANDIIDTSDFAPLLNIKDEPLSEGEGQHLSGDEASEGSAPETSGRGTAKSWSPLDMEKALDALKNQHMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGSSKSWTDEDLKAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALDAIRCGAASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQTAQEPQQSQEHPEEVQPSAPQEYFPSFGADAFLSEVTSMHHVQQHYSQAMYYTQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206478;
- 90% Identity
- -
- 80% Identity
- -