Pbra007528.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989936.1:317314-327814[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-11 9.7e-08 31.9 0.0 4 38 159 194 159 199 0.90 2 4 6.8e-14 7.1e-11 41.9 0.1 1 39 210 248 210 251 0.94 3 4 3.4e-16 3.5e-13 49.3 0.0 2 45 266 310 265 310 0.96 4 4 1.8e-17 1.9e-14 53.3 0.0 1 40 317 357 317 362 0.92
Sequence Information
- Coding Sequence
- ATGCCCGGTTACGGCCCGTCTCATGTTAAGTGTGAGCCGCCTTCAGACGAAGAAGACAACTGTCAGTACGGAAACTATTACGAAACAGAAAAACCACTAAACATAGAATATGACGGAGATGTGTCGGCTGATATTTTGGATCAATTGCAGTTCTCATCAGAACTGGTGGCGGTGCCAGCGGCGCCGGCTGCGACTCCCGTATGCGCCGCATTACCCGCCCCGAGGGAGGCTTCGCTCGCTCTGCTCGAGCCTGTCAAGACCCATCTGATGCAGGGTTCGGAGCTGATGGAAAAACATATATCACTATCGAGTGCCACGGACATACTTGACACGTCTGACTTTGCACCTCTTCTTAATATTAAGGATGAACCACTTTCAGAGGGTGAAGGTCAGCAGCTGAGTGGCGATGAAGCGAGTGAGGGTTCCACTCCGGAGACGAGCGGTCGAGGAGCAGCCAAGAGCTGGTCTCAGCTGGACATGGAGAGAGCCCTTGACGCGCTCAAGAACCATCACATGAGTCTCACCAAGGCCTCCTCGACCTACGGCATACCTTCGACCACGCTGTGGCAAAGGGCCCATCGGATGGGCATCGACACGCCCAAGAAGGAGGGCTCCTCCAAGTCCTGGACCGACGACGACCTCAAGGCGGCCCTGCACGCGCTCAGGACCGGAGCCATCTCCGCCAACAAGGCCAGCAAAGCATACGGTATACCCAGCAGCACCCTGTACAAGATAGCTCGACGAGAGGGAATCCGCTTGGCGGCACCCTTCAACGCGGCGCCCACGTCTTGGCAAAGAGCCGACCTGCAGAGGGCTCTCGACGCCATCCGTTGTGGCGCTGCCTCCGTGCAGCGGGCCGCTTCTCATTACGGCATACCCACTGGCACGTTGTACGGGCGGTGCAAGCGGGAGGGCATCGATTTGTCCCGCTCCAACCCCACGCCGTGGTCCGAGGACGCCATGGGGGAAGCTCTCGAAGCTGTCAGAGTCGGCCAGATGTCGATCAACCAAGCGGCCATCCACTTCAACCTTCCCTACTCTTCACTATACGGTCGCTTCAAGAGATGCAAGCATCAGGTGGCTCAGGAACACCGGCAGGACAAATCCCACGAGAACCTTCCGGAGGATGTTCAGGAACAGAGCCACCCTCGGGAGTACTTCCCGAGCTTCGGGCCGGAAACGCACTCGAGCGAAGCGACATCTATGCAGAACGTGCAGCAACACTACAGCCAAGCGATGTACTACACTCAGTGCAACGTGACCAGTTGA
- Protein Sequence
- MPGYGPSHVKCEPPSDEEDNCQYGNYYETEKPLNIEYDGDVSADILDQLQFSSELVAVPAAPAATPVCAALPAPREASLALLEPVKTHLMQGSELMEKHISLSSATDILDTSDFAPLLNIKDEPLSEGEGQQLSGDEASEGSTPETSGRGAAKSWSQLDMERALDALKNHHMSLTKASSTYGIPSTTLWQRAHRMGIDTPKKEGSSKSWTDDDLKAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWQRADLQRALDAIRCGAASVQRAASHYGIPTGTLYGRCKREGIDLSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKHQVAQEHRQDKSHENLPEDVQEQSHPREYFPSFGPETHSSEATSMQNVQQHYSQAMYYTQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206478;
- 90% Identity
- iTF_01203171; iTF_01204806; iTF_01206478; iTF_01205623; iTF_01203964;
- 80% Identity
- -