Pnap000586.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997698.1:322783-332013[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1e-10 9.8e-08 32.0 0.0 4 38 159 194 156 199 0.89 2 4 1e-13 9.4e-11 41.7 0.1 1 39 210 248 210 251 0.94 3 4 2.6e-16 2.4e-13 50.0 0.0 2 45 266 310 265 310 0.96 4 4 2.9e-18 2.7e-15 56.2 0.0 1 43 317 360 317 362 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGTTACGGCCCGCCTCGAGTAAAGTGCGAGCCGCCTTCAGACGAAGAAGACAACTGCCAGTACGGAAACTATTACGAAGCACAAAAGCCATTAAACACAGAATATGACGGAGATGTGTCGGCTGAAATTCTGGATCAATTACAGTTCTCATCAGAACTGGTGGCGGTCCCGGCGGCACCGACTGCGACTCCCGTATGCGCCGCATTACCCGCCCCGAGGGAGGCTTCGCTCGCTCTGCTGGAGCCTGTCAAGACCCACCTGATGCAGGGTTCGGAGCTGATGGAAAAACACATCTCACTATCGAGTGCGACAGACATAATTGACACTTCTGACTTTGCACCTCTTCTTAATATTAAGGATGAACCACTTTCGGAGGGGGAAGGTCAGCAGCTGAGCGGCGATGAAGCGAGTGAGGGTTCCACTCCGGAGACGAGCGGACGAGGAGCAGCCAAGAGCTGGTCTCCGCTGGACATGGAGAAAGCCCTCGACGCGCTCAAGAACCATCATATGAGTCTTACCAAGGCCTCCTCAACCTACGGCATACCTTCCACCACGCTGTGGCAAAGGGCCCATCGCATGGGCATCGACACTCCCAAGAAGGAGGGCTCTTCCAAGTCCTGGACCGACGAAGACCTCAAGGCGGCCCTGCACGCGCTCAGGACTGGAGCCATCTCCGCCAACAAGGCCAGCAAGGCATACGGTATACCCAGCAGCACCCTGTACAAGATAGCCCGTCGCGAGGGAATCCGCTTGGCGGCACCCTTCAACGCCGCGCCCACGTCTTGGCGAAGAGCCGATCTGCAAAGGGCTCTCGACGCCATCCGTTGTGGCGCTGCCTCCGTGCAGCGGGCCGCTTCTCACTACGGAATACCGACCGGCACTTTGTACGGGCGGTGTAAGCGAGAGGGCATCGAGTTGTCCCGCTCTAACCCCACACCGTGGTCTGAGGACGCCATGGGGGAAGCTCTCGAAGCTGTCAGAGTCGGTCAGATGTCGATAAACCAAGCGGCCATCCATTTCAACCTTCCCTACTCTTCGTTGTACGGTCGTTTCAAGAGATGCAAGTATCAGGTGACACAGGAACACCGAGAGTATAAATCCCAAGAGAACCGGCCGGAGGATCTTCGAGAGCAGAGTCACCCTCAGGAGTACTCGCCGAGCTTCGGATCGGATTCGTACTTGAGCGAAGTGACATCTATGCAGAACGTGCAACAGCACTACAGCCAAGCGATGTACTACACTCAGTGCAACGTCACCAGCTGA
- Protein Sequence
- MPGYGPPRVKCEPPSDEEDNCQYGNYYEAQKPLNTEYDGDVSAEILDQLQFSSELVAVPAAPTATPVCAALPAPREASLALLEPVKTHLMQGSELMEKHISLSSATDIIDTSDFAPLLNIKDEPLSEGEGQQLSGDEASEGSTPETSGRGAAKSWSPLDMEKALDALKNHHMSLTKASSTYGIPSTTLWQRAHRMGIDTPKKEGSSKSWTDEDLKAALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRADLQRALDAIRCGAASVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQVTQEHREYKSQENRPEDLREQSHPQEYSPSFGSDSYLSEVTSMQNVQQHYSQAMYYTQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01206478;
- 90% Identity
- iTF_01202394;
- 80% Identity
- -