Pmel015365.1
Basic Information
- Insect
- Pieris melete
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963693345.1
- Location
- CAVNZK010000112.1:945446-955226[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-78 3e-74 250.7 22.3 1 298 5 284 5 286 0.90 2 3 1 3e+04 -5.4 13.6 1 48 282 328 282 346 0.72 3 3 0.95 2.8e+04 -5.3 10.6 194 233 311 355 302 361 0.40
Sequence Information
- Coding Sequence
- ATGATATTTCAGGCTGAACAGCGACTGGCGGCGCGACGGGCTGCGAGGGCGGAGGCACGAGAGATACGCATGAGGGAATTGGAGAGACAACAGAGGGAACAGGAGGACCATGCTGATAAAGCTTACGACATGTATGCagAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCGTCCCTCAGTCCGGCGGGACTGCACTCGCCGAGGCGGAGTTCGGAGGATTCTGACGAAGTACTCAGTATTAAGGATCTGAGGTACGAATTAAAAGAGGTAGAGGAAAAATTTCGCAAAGCGATGATATTGAACGCTCAGTTGGACAATGACAAAGCGGCGCTGGGATATCAGCTGGAGCTGCTCAAAGATAGAATAGAAGAATTGCAAGAAGATTACGCGCAGttacagCGCGAACACAAAGAAAAATGCTCAGCCCACGAGCGTCTAAAGCGCGATCACGCTACCCTCGAACGCGAGTTGACATGCGCGCGCGACGCCGTACGAGCACGAGACGCGGCCGTGGAGGGTGCGGGCTTCACGTTCGTGGAGTCGGGGGATGCGCAGGCGCAGGGCTTTGGTGCTGTGCCCCCTTTGGCCCTAGTCTCGCATCACTCGCACGCCTTGCTCGAGGACGGAGGAGAGGGCACGCTCGATGTCCGGTTGCAAAACCTCGTGAGCTCCAAGCAGGCCTTGGAGTCggaagtgcggaaactgaaaTTACAACTGAACGAAGAACGCGCGGCTAGACAAAATGGCGTCGCCTCACACCACGACATGGATTATGAGAATGAATTGGAAACTCTAAGGAAATCAATTTCGGAAGCGAAAGGGCGGGCGGCACGAGCTGAAGCGGAAGCGGCGTTACAAGCGGGCGCAGTGGCGAGGCTCGAAGCCCAGGTTCAGAGGCTCAGAGCTCGGCAGGACCATCAGGACGAGCACGAGGAGATGCTTAAGCAGGAGAGGAGGAAGCTGCAGAGAGAGGCACGTGAAGCACTCAACCGAGTTGAAGAACTGGAGACGGAGAACAGTCATCTAACAAAACGGCTAGACAAACTGAAGAATGCTAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MIFQAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGATRLASLSPAGLHSPRRSSEDSDEVLSIKDLRYELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEDYAQLQREHKEKCSAHERLKRDHATLERELTCARDAVRARDAAVEGAGFTFVESGDAQAQGFGAVPPLALVSHHSHALLEDGGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERAARQNGVASHHDMDYENELETLRKSISEAKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- iTF_01202480; iTF_01205716; iTF_00771100;
- 80% Identity
- -