Pbra014345.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_905147105.1
- Location
- LR989935.1:10481300-10486058[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.6e-59 5e-55 187.2 10.5 58 297 20 245 9 247 0.89 2 3 2 2.2e+04 -5.6 13.9 1 47 244 289 244 307 0.73 3 3 0.42 4.6e+03 -3.1 8.0 132 231 279 315 268 323 0.39
Sequence Information
- Coding Sequence
- ATGCATATTCTTGTTTATATTATAGAAACTGTGGGACGTCGTGGTGCAACCAGACTAGCGTCCCTCAGTCCTGCGGGATTGCACTCGCCAAGGCGGAGTTCAGAGGATTCTGACGAAGTACTCAGTATTAAGGATCTGAGGTACGAATTAAAAGAGGTAGAGGAAAAATTTCGCAAAGCGATGATATTGAACGCTCAGTTGGACAATGACAAAGCGGCGCTGGGATATCAGCTGGAGCTGCTCAAAGATAGAATAGAAGAATTGCAAGAAGAGTACGCGCAGTTACAGCGCGAACACAAAGAGAAATGCTCAGCTTACGAGCGTCTAAAGCGCGATCACGCTACCCTCGAACGTGAGTTGACATGCGCACGCGACGCCGTACGAGCACGGGACGCGGCCGTGGAGGGCGCGGGCTTCACGTTCGTGGAGTCGGGGGATGCGCAGGCGCAGGGCTTTGGCGCTGTGCCCCCTTTGGCCCTAGTCTCGCATCACTCGCACGCCTTGCTCGAAGACGGAGGAGAGGGCACGCTCGATGTCCGGTTGCAAAACCTCGTGAGCTCCAAGCAGGCCTTGGAGTCGGAAGTGCGGAAACTAAAGTTACAACTGAACGAAGAACGCTCTGCTAGACAAAATGGCGTCGCCTCACAACACGACATGGATTATGAGAATGAATTGGAAACCCTAAGAAAATCAGTATCGGAGGCGAAAGGGCGGGCGGCACGAGCGGAAGCGGAAGCGGCGTTACAAGCGGGCGCAGTGGCGAGACTCGAGGCCCAGGTGCAGAGGCTCAGAGCTCGGCAGGACCATCAGGACGAGCACGAGGAGATGCTTAAGCAGGAGAGGAGGAAGCTACAGAGAGAGGCACGTGAAGCACTCAACCGTGTGGAAGAATTGGAGACAGAGAACAGTCATCTAACAAAACGGCTAGACAAACTGAAGAATGCTAAGTCAGCACTACTCAAGGAGCTGTGA
- Protein Sequence
- MHILVYIIETVGRRGATRLASLSPAGLHSPRRSSEDSDEVLSIKDLRYELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELQEEYAQLQREHKEKCSAYERLKRDHATLERELTCARDAVRARDAAVEGAGFTFVESGDAQAQGFGAVPPLALVSHHSHALLEDGGEGTLDVRLQNLVSSKQALESEVRKLKLQLNEERSARQNGVASQHDMDYENELETLRKSVSEAKGRAARAEAEAALQAGAVARLEAQVQRLRARQDHQDEHEEMLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- iTF_01204913;
- 80% Identity
- -