Pate005854.1
Basic Information
- Insect
- Phymatocera aterrima
- Gene Symbol
- MBD-R2_1
- Assembly
- GCA_963170745.1
- Location
- OY720659.1:8691043-8698217[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-17 1.3e-13 50.7 0.3 6 69 196 259 191 266 0.91
Sequence Information
- Coding Sequence
- ATGCGTGAATTTGTGGCTGGTGAAAGAATTCTAGCGACTTGGGCTGACGGTAGGAAATATCCTGCCAAAGTAAAAACTGTGTTGGGAAATGACAGATACGATGTTCTTTTCGACGATGGTTATGCCAAGATAGTCAGATCGtcgaaaatgacgaaaattgCTGGTACTACGGAGAAGAAACCAGTGGATGGAGATTATATAGGGAGTAAACAAGAGAGGagagataagaaaagaaagcACAGTGTGATGGATCTATTTCATTCGAATGCTAAAAAAAGGGCAAGGACAGAGTCCGAAAAGTCGCTTAAAAAAGAAGAGTCTTTGATGAGCGAAGATGATAATCAAGTCGAACCAGCCGAATTAATGCCTGCAATAGCCTATGATGCAGGTACAGAGGTACTCAAAGGATTCGAGCCAAGTAAACCAAAAGTTAAAACTCATcccaagaaaaagaaaaaagaagtttcCAAGATCGATACCGACAACGAAGATGAAGTAGTAGGGCCAGAATGGATTGACGGAGAGCCTCAGGGAATAGAATCTTATATTGTAGATGGTAATGATGGACCCCGCCGGTCTATCATTGTCGCAGATAAGCGACTACCACCTGGTTGGCAGAAGCACTTCACTCAGAGAAGAACTGGTACCTCTGCTGGAAAGTGGGATGTTTTGTTCATACAtaaatcaagtggaaaaaagttcagaTCAAGAAATGATATTCGAACGTTTATGGAGCATCAAGGACATTTTGACTTTGAGcctgaaaaattcgatttttgtaTCCATCGAAAAAAGAACGGCAAGGCTAATGCTGGAAAGTTGAAACACGAGCCACCGATGGAAATGCCAAAAAAGATAAAGACTTTGTTACCCAAAATCAAAACGCCTGTCAGCACTCCTGAAGCTGCGCCTATTCCTATTGTACCTCCGCCTGTTCCACAGCCTCCAGTTACTCCAGTGACGCCTGCTGATCCTGGTGCTGTTTTCATTGGAGGACTGCGCGTTGAGATGGAAGACAGTGCCTATAAATGTCCCAAAGAAGGTTGTAACAAGAATTTTCGTAAAGAGAATCTTCTCCAAATGCACATTAAGCATTACCATCCAGAGTATTCCAAGTTTTTGGGATCTACTCCGAACGTAGCAGACTTAGCTTACGCCAGAACGATCGGTGAATCAATCGAAGATATTATACCAAAGAAGCAGAATAACTTCTTAGAAAAAATTAACAAgttcgaaaagaagaaagcaTCTCAAGAGAAACATGTGTCTTCTGTTAACGAATCTGAACCGAATCGGGTGGAAAAAATTGGTAGTTTGGTAGAAGAAGAGCCCAAATTAGAAGTCACGTCACCTGTTACAAGTCAGAGCATTGACATCGATgaagaaattctcaaaaaaagAGAAGCTAACTGCGCCATGTCTCCAGGAACTTTATTCGATCTGAAAATTAGAGACGAAAAAACACAAACCGGCATCAAAACCTTATTACCAGTTAGACCCGCAGTTCCTAATCCTGTAACGGCTAACATCACCTCAGAGTTGCATAAATTGGATAGATCTAAATCTTTAGACGAACCATTCAACTCTGAGAAAGGGAAATCTATAAGAAAACGTCAAATGTCTGAGTATAATTCAGACATGCCaatcaagtacaagaaaaaGCAAGGCTTGCTGGAGCTTAAAGATGATTATGGGGAGCTAGAAGATGGTACATTGGACACTGAAGAGCCCATTGCACCCACCTACAGGTTCAGTAGGAGAAAATCAGATCCGAAGAGCGATGAGAATAGTCAAACCAGTGAACTAAACGATTTTCATCGTGAGAAATGTGAAACCCCGAAAGGGGATGCTGCCAAAAGagataatagtaatgatactGAAGATGGAGACGGCGTCATGATGATGATTAATGGAGAACTGGTAAAGGTGGAACAGCTTCGTcgtgaagaaataataaattgtacatGTGGATTCATGGAAGAAGATGGATTGATGATTCAGTGCGATCTCTGCCTTTGCTGGCAGCACGGACACTGCAATGCTATTGAACGGGAGAAAGATGTAccagaaaaatatgtttgcTACATTTGTCTCAATCCTTACAGGCAGAGACCATCTAAGAAATATGTTCATGATCAGGATTGGATTAAAGAAGGAAAATTGCCAAGTCTCTCGAAACGTATAAAGAATCAAGCTGTCATCAATCAAAGGACTGCCATGTTGAAGCGTTCGTACGATTTAGTTGCTGCTTTGTTACAAATACAACAAATTTTACACAGTCTTCGAGTGAAAATCAATGTCGCTCAaaaaaaagaTCATCCAAAACTATATCTTTGGGCAAAAAATTGGGAAAGGACTGAAATACCAACACCAGATACTAATCCAGTACCAATAATGGAAATTGTCAAACCTCCTCTTGAAACGGCTGAGTCAAGTTTAGATAGTTCGCCGTGTGCGgaggtgaaaattgaaatcaaggaAGAACCAAAGGAGGAATTGGACAAAAAATCAATCGCTTCAAATTCAGAGCTCATGAAAATCTTAGAAGAAGATAGCTTGCATGTCGAAGAACTTAAGAATATTAAAAAACAGGAGAGCCAAAATGATGGGCAAATTCTGTTAGATGCATTGACCAGAAATAGTACAGATAAAAGAGACCCTGATGTGAAAACAGATAATAATGAACCACCGAATAATCAGCCATCTACATCCAAAACTCCAGATCTAATCTCTGCAACTCCAATTGAGAATATTAAACATGAAGAGGCACATCTCGATGAGATTTTGCCTCTACAACCCTTCATACCGGAACCAGAAGCTCCGATAGATCCTGCCGAATGTCGGTCGAGGCTGCTTGAACATatcgatcattttcaaaaCCATATTGATTCTCAGCTCACTACCATTGAGGCACAAGTGTCTGCATTGGAAGCAATGGATCCGGATGATCCTGTATCGAATCCTGATGTCTTACCACGAACAAAACAGACTGTCCAAATGTTACTGAGGGATTTAGCAACTGTTAGAAAACTAGCTGCGCTATGctga
- Protein Sequence
- MREFVAGERILATWADGRKYPAKVKTVLGNDRYDVLFDDGYAKIVRSSKMTKIAGTTEKKPVDGDYIGSKQERRDKKRKHSVMDLFHSNAKKRARTESEKSLKKEESLMSEDDNQVEPAELMPAIAYDAGTEVLKGFEPSKPKVKTHPKKKKKEVSKIDTDNEDEVVGPEWIDGEPQGIESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRRTGTSAGKWDVLFIHKSSGKKFRSRNDIRTFMEHQGHFDFEPEKFDFCIHRKKNGKANAGKLKHEPPMEMPKKIKTLLPKIKTPVSTPEAAPIPIVPPPVPQPPVTPVTPADPGAVFIGGLRVEMEDSAYKCPKEGCNKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIEDIIPKKQNNFLEKINKFEKKKASQEKHVSSVNESEPNRVEKIGSLVEEEPKLEVTSPVTSQSIDIDEEILKKREANCAMSPGTLFDLKIRDEKTQTGIKTLLPVRPAVPNPVTANITSELHKLDRSKSLDEPFNSEKGKSIRKRQMSEYNSDMPIKYKKKQGLLELKDDYGELEDGTLDTEEPIAPTYRFSRRKSDPKSDENSQTSELNDFHREKCETPKGDAAKRDNSNDTEDGDGVMMMINGELVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCYICLNPYRQRPSKKYVHDQDWIKEGKLPSLSKRIKNQAVINQRTAMLKRSYDLVAALLQIQQILHSLRVKINVAQKKDHPKLYLWAKNWERTEIPTPDTNPVPIMEIVKPPLETAESSLDSSPCAEVKIEIKEEPKEELDKKSIASNSELMKILEEDSLHVEELKNIKKQESQNDGQILLDALTRNSTDKRDPDVKTDNNEPPNNQPSTSKTPDLISATPIENIKHEEAHLDEILPLQPFIPEPEAPIDPAECRSRLLEHIDHFQNHIDSQLTTIEAQVSALEAMDPDDPVSNPDVLPRTKQTVQMLLRDLATVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01412323; iTF_00938692; iTF_01411508; iTF_01414175; iTF_01048906; iTF_01048225; iTF_00175028; iTF_00174177; iTF_00175748; iTF_00719415; iTF_00718565; iTF_01413178; iTF_00060209; iTF_00939550; iTF_01303356;
- 90% Identity
- -
- 80% Identity
- -