Rchl013653.1
Basic Information
- Insect
- Rhogogaster chlorosoma
- Gene Symbol
- MBD-R2
- Assembly
- GCA_944452905.1
- Location
- CALYCC010000064.1:2175301-2183053[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-17 2e-13 50.7 0.3 6 69 195 258 190 266 0.91 2 2 2.1 1.8e+04 -3.7 0.0 41 64 834 856 831 859 0.76
Sequence Information
- Coding Sequence
- ATGCGTGAATTCGTAGCTGGCGAAAGAATTCTAGCGACTTGGGCTGACGGCAGGAAATATCCTGCTAAAGTAAAGACTGTGTTGGGAAATGACAGATACGACGTTCTATTCGACGATGGTTATGCCAAGATAGTCAGATCGTCGAAGATGACCAAAATTGCTACTACTACGGAAAAGAAGCCAATAGATGGGGATTATATAGGGAGTAAGCAAGAGAGGAGAGATAAGAAAAGAAAGCACAGCGTGATGGATCTGTTTCAATCCAACACCAAGAAACGGCCAAGAACCGATTCGGAAAAGTCGATAAAAAAGGAAGAGTCCTTGATAAGCGAAGACGACAACCAAGTCGAACTACCCGAGCTGACACCCGCGATTGCCTACGAGTCTGGCACGGAGGTACTCAAGGGATTCGAGCCTAGTAAACCCAAGGTTAAAACTTATGCTAAAAAAAAGAAAAAGGAAATATCTAAGATCGATACCGACAACGAAGACGAGGTAGTGCCGGAATGGATCGACGGCGAGCCCCAAGGGATAGAGTCTTACATCGTCGATGGTAATGACGGACCACGCCGGTCCATCATTGTGGCGGATAAAAGACTGCCACCTGGATGGCAGAAGCATTTTACTCAGAGAAGAACCGGAACTTCTGCTGGGAAGTGGGACGTTTTGTTTATACACAAATCAAGCGGCAAAAAGTTCAGATCGCGTAACGATATCAGATCATTTATGGAACATCAAGGACAGTTCGATTTCGAGCCAGAGAAATTTGACTTCTGTATACACCGTAAGAAGAACAGCAAGAATAGCGCTGCTAAATTGAAGCAGGAACAACCCACGGAAGTTCCGAAAAAAATCAAAACTCTTTTGCCCAAGACTAAAACACCGGCCAGCACTCCCGATCCTACACCTCTATGCATTGTACCGCCGCCTGTTCAGCCGCCACCAATTACTCCGGTCACACCCGCAGATCCTGGTGCTGTTTTCATCGGAGGACTACGAGTTGAAATGGAAGACAGTGCTTATAAATGTCCGAAAGAAGGTTGCAACAAGAATTTTCGTAAGGAGAATCTCCTTCAAATGCATATCAAGCATTATCACCCTGAGTATTCAAAGTTTTTGGGATCAACACCGAACGTAGCTGACTTGGCTTATGCCAGAACGATCGGCGAGTCGATCGAAGACATTATACCAAAGAAGCAGAACAACTTTTTGGAAAAGATAAACAAGTTTGAAAAGAAAAAAGCATCCCAAGAGAAACATGTGTCTGTTAATGAACCCGAATCGAACAGAACCGAAAAAATGTCCAATTCAACAAAAGAGGATTCCAAGTTCGAAGTCACATCGCCTATCTCAACCCAGAGCATCGACATAGATGATGATTTTATCAAAAAGAGGGAAGCCAGTTGCGCCATGTCCCCTGGGACGTTGTTCGACTTGAAAATCAGGGAAGAAAAAACTCAGACAGGGATTAAAACTTTGTTACCAGTTAGGCCGGCTCTTCCCGCTCCACTCGCTACCAACGTTGCTGCAGAATTGAGCAAATTAGACAGGTCCAAATCGTTGGACGAACCGTCAGTGTCCGAGAAAGGGAAGTCTATAAGGAAGCGGCAGATGTCGGAATACAATTCAGACGTACAAATCAAGTACAAGAAGAAACAAGGCATGCTGGAGCTTAAGGATGATTATGGGGATTTAGATGATGGTACTTTGGACATTGAGGAGCCGATTGCCCCTACGTACAGATTCAGTCGGAGAAAATCTGATCCGAAGAGTGATGAGAATAGTCAAACCAGTCAACTAAACGATTCTCATCTTGATAAAGGTGATACCCCTAAAGGGGATGCTGCCAAAAGAGATAATAGTAATGATACTGAAGATGGGGACGGTGTAATGATGATGATTAATGGTGAACTAGTCAAGGTGGAGCAGCTTCGCAGAGAAGAGATAATAAATTGTACATGTGGATTTATGGAGGAGGATGGATTAATGATTCAATGTGATCTTTGCCTTTGCTGGCAGCATGGACACTGCAATGCTATTGAAAGAGAGAAAGATGTGCCGGAAAAATACGTGTGCCACATTTGTCTCAATCCTTATAGACAGAGACCATCTAAGAAATACATTCACGATCAGGACTGGATTAAAGAAGGAAAATTGCCCAGCCTATCCAATCGCACCAAGAATCAATCTGCCATCGATCAAAGAACCGCCATGTTGAAGCGTTCGTATGATTTAGTCGCAGCATTGCTACAAATACAACAAATTCTTCACAGTCTGAGAGTGAAAATCAATGTCGCCGAAAAAAAGGATCATCCGAAATTATATCTTTGGGCAAAAAATTGGGAGAAAAGCGAGATACCAACACCGGATACCGATCCGGTGCCGATAATGGAAATAGTTAAACCATCTCTCGAGACGGCAGAGTCTAGTTTGGACAGTTCACCCACTACGGAAGTAAAAGTTGAAATAAAAGAAGAACCCAAGGAGGAGCCTGACGAGAAGTCAATCGCATCCAATTCGGAGCTGATGAAAATTTTAGAAGAAGATAGTCTGCATGCCGAGGAACTTAAGAATATTAAAAAACAGGAGAGCCAAAGCGAAGGTCATATTCTTTTGGAGGCATTGACCAGGAATAGTACAGACAAAATAGCCTCGGAACTGAAAACTGATAACAGCGAACCACCGAATAATCAGCCATCCACCTCGAAAACACCAGATCTGGTATCTTCAAATCCAACTGATAATATTGAGCACGAAGAGGCTCGTTTGAATGAAATTTTGCCACTGCAACCTTTCATACCGGAACCAGAAGCCCCGATAGACCCTGCTGAGTGTCGTTCAAGACTGCTGGACCACATTGATCATTTTCAAAACCACATAGATTCGCGGCTCATTACAATCGAGGCACAAGTTTCCGCTCTAGAGGCAATGGACCCAGATGATCCTATATCTAATCCTGATGTATTACCTCGGACAAAGCAAACCGTACAAATGCTACTCAGGGACTTGGCGACTGTTAGAAAATTGGCCTCACTTTGCTGA
- Protein Sequence
- MREFVAGERILATWADGRKYPAKVKTVLGNDRYDVLFDDGYAKIVRSSKMTKIATTTEKKPIDGDYIGSKQERRDKKRKHSVMDLFQSNTKKRPRTDSEKSIKKEESLISEDDNQVELPELTPAIAYESGTEVLKGFEPSKPKVKTYAKKKKKEISKIDTDNEDEVVPEWIDGEPQGIESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRRTGTSAGKWDVLFIHKSSGKKFRSRNDIRSFMEHQGQFDFEPEKFDFCIHRKKNSKNSAAKLKQEQPTEVPKKIKTLLPKTKTPASTPDPTPLCIVPPPVQPPPITPVTPADPGAVFIGGLRVEMEDSAYKCPKEGCNKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIEDIIPKKQNNFLEKINKFEKKKASQEKHVSVNEPESNRTEKMSNSTKEDSKFEVTSPISTQSIDIDDDFIKKREASCAMSPGTLFDLKIREEKTQTGIKTLLPVRPALPAPLATNVAAELSKLDRSKSLDEPSVSEKGKSIRKRQMSEYNSDVQIKYKKKQGMLELKDDYGDLDDGTLDIEEPIAPTYRFSRRKSDPKSDENSQTSQLNDSHLDKGDTPKGDAAKRDNSNDTEDGDGVMMMINGELVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCHICLNPYRQRPSKKYIHDQDWIKEGKLPSLSNRTKNQSAIDQRTAMLKRSYDLVAALLQIQQILHSLRVKINVAEKKDHPKLYLWAKNWEKSEIPTPDTDPVPIMEIVKPSLETAESSLDSSPTTEVKVEIKEEPKEEPDEKSIASNSELMKILEEDSLHAEELKNIKKQESQSEGHILLEALTRNSTDKIASELKTDNSEPPNNQPSTSKTPDLVSSNPTDNIEHEEARLNEILPLQPFIPEPEAPIDPAECRSRLLDHIDHFQNHIDSRLITIEAQVSALEAMDPDDPISNPDVLPRTKQTVQMLLRDLATVRKLASLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200150;
- 90% Identity
- iTF_00938692;
- 80% Identity
- -