Aros009884.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athalia rosae
Gene Symbol
MBD-R2
Assembly
GCA_000344095.2
Location
NW:103637-114793[-]

Transcription Factor Domain

TF Family
MBD
Domain
MBD domain
PFAM
PF01429
TF Group
Unclassified Structure
Description
The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.9e-17 1.4e-13 49.5 0.4 6 69 281 344 276 351 0.91

Sequence Information

Coding Sequence
ATGAGCCAGATGGTCACCCGTGGAGGCCTCAAGTTTTTCCCTGGTGCTAAGTTGGAAGCTAAggatttcaatgaaaaatgGTATTCTGCTCGTGTAGTTGAGACAGACTGGGTCGAAAGAGAAGTTTTGATACACTTTGACAAATGGAGTTCCAGATTTGACGAATGGATCCCAATGGATAGCTCGAGGCTGCGAGTACTTCAAGTACAGCCAAACGAGTCAACATGGACGCTACCACCTCCAGATACAAAGATGCGGGAATTTGTCGCTGGTGAAAGAATTTTAGCCACTTGGGCGGATGGCAGAAAGTATCCTGCAAAAGTTAAAACTGTGCTTGGAAATGACAGATACGATGTGCTTTTTGATGACGGTTATGCCAAGATCGTCAGATCGTCCAAGATGACAAAAATTGCTGCTACCACCGAAAAGaAGGCAATGGACGGAGAATATATAGGGAGTaaacaagaaagaagagaTAAGAAGCGAAAGCACAGTGTAATGGATCTGTTTCATTCAAATGCAAAAAAACGGGCAAGAACTGATTCTGAGAAGTCGCTCAAGAAGGATGATTCTTTGGTGAGCGAAGACGATGGAAAAGTTGAGGAAACTGAGTTAACGCCTGCAATAGCATATGAGGCTGGTACCGAAGTTCTCAAAGGATTTGAGCCTAGTAAAACAAAGGTCAAAACGTAcgccaagaaaaaaaagaaggagctATCCAAATTTGATACAGACAATGAAGATGAAGTTGGACCAGAATGGATCGATGGTGAACCAAAAGGGATAGAATCTTACATTGTGGACGGTAATGATGTTGCAGGACCACGCAGATCTATAATAGTGGCAGATAAACGTTTGCCACCTGGATGGCAAAAGCACTTTACTCAAAGAAGGACAGGTACCTCTGCTGGAAAATGGGATGTTTTGTTTATACAtAAATCaagtgggaaaaaattcagatcgCGCAACGACATCCGTTCGTTCATGGAGCAGCAAGGACAGTTCGATTTCGAGccagaaaaatttgatttttgcatACATCGTaagaaaaacggtaaaaaCAGTACGGCAAAAATGAGACAACAGGAGCCGGTGGTTGaagttcagaaaaaaatcaaaactctGCTGCCAAAAGCTAAAACGGCCGTCAGCACCCCTGAGAGTATGCCCAGCTTCACCCCTCCTTCGCTCGTCTCGATGCATCCAGTTACTCCAGTAACGACGCCTGCTGATCCTGGTGCCATAACATATTCCGTTTTCATCGGAGGGCTGAGAGTCGAAATGGAAGACAGTGCTTACAAGTGCCCAAAAGAGGGTTGCAATAAGAATTTCCGAAAGGAGAACCTGCTTCAAATGCACATAAAACATTATCACCCTGAATATTCCAAGTTCTTGGGGACTACGCCCAATGTGGCTGACCTGGCGTACGCGAGGATGATCGGTGAGTCGGTGGAAGATATAATCccgaaaaaacagaacaactttttggaaaaaatcaacaagtttgagaagaaaaaagcttctCAAGACAAACAAGTGTCTGGCAATGAATGCGAATCTGGTCGAGTCGATAAAATGGCTGGTTCAACGATGGAAGATTCTAAATTAGAAATCACCTCTCCGATATCAACACAAAATATTGACATGGACGAAGAGATTATGAAAAATAGGGAGGCCAGCTGTGCCATGTCACCAGGGACATTGTTTGATCTGAAAATTAGAGAGGAGAAAACTCAAACAGGCATTAAGACACTGCTGCCAGTTAGACCCACGGCTGTCACTCCCGTTGCCAATAGCGTTACTACAGAGGCTCTGAAGGTGGATAGATCCAAGTCAGCGGATGAACCTCTGAAcgcggaaaaaggaaaatctatGAGGAAGCGGCAGATGACTGAATATAACTCTGACTTACAAATCAAGTACAAGAAGAAACAAGGCATGTTGGAGCTTAAGGATGATTATGGGGAGTTAGATGATGGTATTTTGGACACTGAAGAACCTGTTGCCCCTACATACAGATTCAGTCGCAGAAAATCAGACCCAAAAAGTGATGAGAATAGTCAAAGCAGTCAGCTTAACGATTCTCATCTTGAGAAAGGTGAAACCCCGAAAGGGGATGCTGCCAAAAGagataatagtaatgatactGAAGATGCTGAAggggtgatgatgatgattaatgGGGAGCTTGTAAAAGTGGAACAGCTGCGCAGggaggaaataataaattgtacgtGTGGATACATGGAAGAGGACGGATTGATGATTCAGTGTGATTTGTGTCTCTGCTGGCAGCATGGGCACTGTAACGCTatagaacgagaaaaagatgTACCAGAGAAATACGTTTGCTATATTTGTTTACATCCGTATAGACAAAGACAATCGAAAAAGTACATTTACGATCAGGACTGGATTAAGGAAGGAATATTGCCCAGCCTTCCAAATCGTACAAAAAATCCAGCCACTATCAATCACAGGAGTGCTATGTTGAAGCGCTCGTACGATTTAGTTGCCGCGCTCTTGCAAATACAGCAAATTCTACACAGTCTACGAGTAAAAATCAACGTTGCTCAGAAGAAGGATCATCCAAAGCTTTATTTATGGGCTAAGAACTGGGAGAAAACTGAGATCCCAGCACCAAACACTGATCCGGTACCTATAATGGAGATCGTTAAGCCATCCTTCGCTCCAACTGAATCTAGTTTGGATAGTTCACCATCGATGGACGTAAAGGTGGaaataaagaacgaaataaaggaagaatCGGACGAAAAATCAATTGCATCTAATTCTGAACTCATGAAAATTCTGGAAGAGGACAGTTTACATTCTGAAGAATTGAAGAACACTAAAAAACAGGAGATCCCGAACGAAGGAAACATACTTCTAGGCGCTCTCACTAAAGATAATTTAGATGAATCAGCCTCTGAAACTAAACCTGATAACAGTGTCTCATTTTCAGAGCCACCGAATAATCAACCATCAACCTCAAAGACCCCGGATCTAGTGTGTCCAGCTGAGCCACCAAAGACTGAGCCTGAGGAACAAGGTGATCTCAGTGACATGATCAATCTTCAGCCGTTCATTCCAGAACCAGAAGCTCCGATTGATCCAGCTGAATGTAGATCACGATTGCTGGAACATATCGAACATTTTCAGAATCACATTGATTCCCGGCTCACTACGATCGAAACACAAGTTACCGcACTAGAAGCCATGGACCCAGATGACTCTTTGTCAAATACAGATGTCTTACCTCGGACAAAACAAACCGTGCAAATGCTGCTCAGAGACCTGGCGACCGTCAGTAAACTTGCTGCGCTCTGCTGA
Protein Sequence
MSQMVTRGGLKFFPGAKLEAKDFNEKWYSARVVETDWVEREVLIHFDKWSSRFDEWIPMDSSRLRVLQVQPNESTWTLPPPDTKMREFVAGERILATWADGRKYPAKVKTVLGNDRYDVLFDDGYAKIVRSSKMTKIAATTEKKAMDGEYIGSKQERRDKKRKHSVMDLFHSNAKKRARTDSEKSLKKDDSLVSEDDGKVEETELTPAIAYEAGTEVLKGFEPSKTKVKTYAKKKKKELSKFDTDNEDEVGPEWIDGEPKGIESYIVDGNDVAGPRRSIIVADKRLPPGWQKHFTQRRTGTSAGKWDVLFIHKSSGKKFRSRNDIRSFMEQQGQFDFEPEKFDFCIHRKKNGKNSTAKMRQQEPVVEVQKKIKTLLPKAKTAVSTPESMPSFTPPSLVSMHPVTPVTTPADPGAITYSVFIGGLRVEMEDSAYKCPKEGCNKNFRKENLLQMHIKHYHPEYSKFLGTTPNVADLAYARMIGESVEDIIPKKQNNFLEKINKFEKKKASQDKQVSGNECESGRVDKMAGSTMEDSKLEITSPISTQNIDMDEEIMKNREASCAMSPGTLFDLKIREEKTQTGIKTLLPVRPTAVTPVANSVTTEALKVDRSKSADEPLNAEKGKSMRKRQMTEYNSDLQIKYKKKQGMLELKDDYGELDDGILDTEEPVAPTYRFSRRKSDPKSDENSQSSQLNDSHLEKGETPKGDAAKRDNSNDTEDAEGVMMMINGELVKVEQLRREEIINCTCGYMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCYICLHPYRQRQSKKYIYDQDWIKEGILPSLPNRTKNPATINHRSAMLKRSYDLVAALLQIQQILHSLRVKINVAQKKDHPKLYLWAKNWEKTEIPAPNTDPVPIMEIVKPSFAPTESSLDSSPSMDVKVEIKNEIKEESDEKSIASNSELMKILEEDSLHSEELKNTKKQEIPNEGNILLGALTKDNLDESASETKPDNSVSFSEPPNNQPSTSKTPDLVCPAEPPKTEPEEQGDLSDMINLQPFIPEPEAPIDPAECRSRLLEHIEHFQNHIDSRLTTIETQVTALEAMDPDDSLSNTDVLPRTKQTVQMLLRDLATVSKLAALC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01200150;
90% Identity
iTF_00175028; iTF_00174177;
80% Identity
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