Malb013960.1
Basic Information
- Insect
- Macrophya alboannulata
- Gene Symbol
- MBD-R2
- Assembly
- GCA_949628255.1
- Location
- OX451208.1:20693043-20705699[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-16 1.4e-12 47.9 0.2 6 69 276 339 271 347 0.91 2 2 1.6 1.3e+04 -3.3 0.0 42 66 916 939 915 940 0.81
Sequence Information
- Coding Sequence
- ATGGTAAGCCGCGGAGGCCTCAAGTTTTTCCCTGGTGCAAAGTTGGAAGCTAAggatttcaatgaaaaatgGTATTCCGCACGTGTAGTTGAAACCGATTGGGTCGAGAGAGAAGTGTTGATACACTTTGACAAATGGAGTTCAAGATTCGACGAATGGATACCAATGGACAGCTCGAGGCTACGAGTACTTGAAGTACAGCCAAACGAGTCAACTTGGACGCTACCACCTCCGGAGACGAAAATGCGTGAATTTGTGGTTGATGAGAGAATTCTAGCGACGTGGGCTGACGGTAGAAAATATCCTGCAAAAGTAAAGACCGTGTTGGGAAATGACAGATACGATGTTTTATTCGACGATGGTTATGCAAAGATAGTCAGATCGTCGAAAATGACGAAAATTGCTGCTACTACGGAAAAGAAACCAGTAGATGGAGATTATATAGGAAGTAAACAAGAGAGAagagataagaaaagaaagcACAGTGTTATGGATCTGTTTCAATCTAATTCTAAGAAACGACAGAGAACCGATTCTGAAAAGTCACTTAAAAAGGAAGAATCATTGATTAGTGAAGACGATAGTCAAATAGAACCAACGGAATTGACCCCTGCGATAGCCTACGAGTCTGGTACAGAGGTACTCAAGGGGTTCGAGCCAAGTAAACCTAAAGTGAAAACTTACgccaagaaaaagaagaaggaaattTCCAAGATCGATACCGATAACGAAGATGAAGTGGTGCCAGAATGGATTGACGGAGAGCCTCAAGGGATAGAATCTTATATCGTTGATGGTAATGATGGACCACGCCGGTCTATTATTGTGGCAGATAAGAGACTACCACTTGGTTGGCAGAAGCATTTTACTCAGAGAAGGACTGGCACATCTGCTGGAAAATGGGATGTTTTGTTCATACAcaaatCAAGTGGAAAAAAGTTCAGATCACGAAATGATATTCGATCATTCATGGAACAGCAGGGACAACTTGATTTTGAACCagagaaatttgatttttgtataCATCGTAAAAAGAACAGCAAAAGTAACGCTGCTAAATTAAAACAGGAACCACCGACGGAAAttccaaagaaaataaaaactcttTTACCTAAAACTAAAACGCCAGTCAGCACCCCTGATCCTACACCTGTTTGCACTGTACCTCCGCCTGTTCAGCCGGCGCCAATTACTCCCGTTACACCTGCCGATCCTGgtgCCGTTTTTATTGGAGGACTCCGTGTCGAAATGGAAGACAGTGCTTATAAATGTCCGAAAGAAGGTTGCAATAAGAATTTTCGTAAAGAAAATCTTCTTCAAATGCATATAAAGCATTATCATCCTGAGTATTCAAAGTTTTTGGGATCTACGCCGAACGTAGCCGACTTAGCTTATGCCAGAACGATTGGGGAGTCAATCGAAGACATCATACCAAAGAAACAGAATAACTTTTTAGAAAAGATCAACaagtttgaaaagaaaaaagcatcACAGGAAAAGCATGTGTCTGTTATCGAATCTGAACCaaatagaattgaaaaattgataaattcagtaaaagaaGATATTAAATTGGAAGTTACTTCGCCTATTTCAACACAAAGTATTGACATCGATGAggaaattattaaaaagaGGGAAGCTAGCTGCGCCATGTCACCAGGGACTTTGTTCGATCTGAAaattagagaagaaaaaactcaAACAGGCATCAAAACGTTATTACCAGTTAGACCCGCACTTCCTGCTCCTCTGAGTATCAATGTTGCTGCAGAATTGGACAAATTGGACAGGTCTAAATCTTTAGACGAACCATCAGTTtcggaaaaaggaaaatccATAAGGAAACGGCAAATGTCGGAGTATAATTCTGACGTGCaaataaaatacaagaaaaaacaagGCATGCTGGAGCTTAAGGATGATTATGGGGATTTAGATGACAGTACTTTGGACATTGAAGAGCCGATTGCCCCTACGTACAGGTTCAGTCGAAGAAAATCTGATCCGAAGAGTGATGAGAATAGTCAAACCAGTCAACTAAACGATTCTCATCTTGAGAAAGGTGATACCCCTAAAGGGGATGCTGCCAAAAGAGATAATAGTAATGATACCGaagATGGAGACGGCgtaatgatgatgattaatGGCGAACTAGTCAAGGTGGAACAGCTTCGtagagaagaaataataaattgtacttgTGGATTTATGGAAGAAGATGGATTGATGATTCAGTGTGATCTTTGTCTTTGCTGGCAGCATGGGCATTGCAACGctatcgaaaaagaaaaagatgtgccggaaaaatatgtttgttaCATTTGTCTCAATCCTTATAGACAAAGGCCATCTAAAAAGTATATCCACGATCAGGACTGGATTAAAGAAGGAAAATTGCCTAGTCTATCAAATCGAACGAAGAATCAATCCGCCATTGATCAAAGAACAGCCATGTTGAAACGCTCGTACGATTTAGTCGCTGCATTGCtacaaatacaacaaattcTGCACAGTTTGAGAGTGAAGATCAATGTTGCTGAgaaaaaagaTCACCCGAAATTATATCTGTGGGCAAAAAATTGGGAGAAAACTGATATACCAACACCGAATACTGATCCAGTGCCAATAATGGAAATTGTTAAACCTCCTCCTGAGACAACCGAGTCTAGTTTGGATAGTTCACCTACCACGGaaataaaagttgaaataaaGGAGGAACCGAAAGATGAACAGGACGAGAAATCGATTGCATCAAATTCAGAGCttatgaaaatattagaaGAAGATAGTCTCCATTCCGAAGAActtaagaatataaaaaaacaggAGAGCCAAAGCGAAGGTCATATACTTTTGGAGGCATTGACGAGAAATagtacagaaaaaataaattccgaaataaaaactgataaCAGCGagcCACCAAATAATCAGCCATCTACTTCCAAAACACCAGATCTGATCTCTTCAACTCAAACGGAGAATACTGAGCATGAAGAGGCTCGTCTTAACGAAATTTTGCCTCTACAACCTTTTATACCTGAACCAGAGGCTCCTATAGATCCTGCTGAGTGTCGGTCAAGACTGTTGGAACATATTGATCACTTTCAAAATCACATTGATTCTCGGCTTATTACCATAGAGGCTCAAGTGTCTGCGCTGGAGGCCATGGATCCAGATGACCCTCTAGCAAATCCTGATGTTTTACCTCGAACAAAACAGACTGTGCAAATGTTACTCAGGGATTTGGCGACTGTTAGAAAACTGGCCGCTTTGTGCTGA
- Protein Sequence
- MVSRGGLKFFPGAKLEAKDFNEKWYSARVVETDWVEREVLIHFDKWSSRFDEWIPMDSSRLRVLEVQPNESTWTLPPPETKMREFVVDERILATWADGRKYPAKVKTVLGNDRYDVLFDDGYAKIVRSSKMTKIAATTEKKPVDGDYIGSKQERRDKKRKHSVMDLFQSNSKKRQRTDSEKSLKKEESLISEDDSQIEPTELTPAIAYESGTEVLKGFEPSKPKVKTYAKKKKKEISKIDTDNEDEVVPEWIDGEPQGIESYIVDGNDGPRRSIIVADKRLPLGWQKHFTQRRTGTSAGKWDVLFIHKSSGKKFRSRNDIRSFMEQQGQLDFEPEKFDFCIHRKKNSKSNAAKLKQEPPTEIPKKIKTLLPKTKTPVSTPDPTPVCTVPPPVQPAPITPVTPADPGAVFIGGLRVEMEDSAYKCPKEGCNKNFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESIEDIIPKKQNNFLEKINKFEKKKASQEKHVSVIESEPNRIEKLINSVKEDIKLEVTSPISTQSIDIDEEIIKKREASCAMSPGTLFDLKIREEKTQTGIKTLLPVRPALPAPLSINVAAELDKLDRSKSLDEPSVSEKGKSIRKRQMSEYNSDVQIKYKKKQGMLELKDDYGDLDDSTLDIEEPIAPTYRFSRRKSDPKSDENSQTSQLNDSHLEKGDTPKGDAAKRDNSNDTEDGDGVMMMINGELVKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEKEKDVPEKYVCYICLNPYRQRPSKKYIHDQDWIKEGKLPSLSNRTKNQSAIDQRTAMLKRSYDLVAALLQIQQILHSLRVKINVAEKKDHPKLYLWAKNWEKTDIPTPNTDPVPIMEIVKPPPETTESSLDSSPTTEIKVEIKEEPKDEQDEKSIASNSELMKILEEDSLHSEELKNIKKQESQSEGHILLEALTRNSTEKINSEIKTDNSEPPNNQPSTSKTPDLISSTQTENTEHEEARLNEILPLQPFIPEPEAPIDPAECRSRLLEHIDHFQNHIDSRLITIEAQVSALEAMDPDDPLANPDVLPRTKQTVQMLLRDLATVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01200150;
- 90% Identity
- iTF_01412323; iTF_01411508; iTF_01303356; iTF_00939550; iTF_00060209; iTF_01414175; iTF_01413178;
- 80% Identity
- -