Palb007276.1
Basic Information
- Insect
- Philonicus albiceps
- Gene Symbol
- -
- Assembly
- GCA_963969385.1
- Location
- OZ017772.1:52835271-52836656[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.9e-14 1.1e-10 41.9 0.0 2 44 262 304 261 304 0.93 2 3 0.0045 6.1 7.5 0.0 8 38 315 344 311 349 0.76 3 3 1.5e-16 2.1e-13 50.6 0.0 5 38 371 403 369 406 0.95
Sequence Information
- Coding Sequence
- ATGAACCATTTGAAGTGGATGGGCCACACCGATACGGTCCTAGAAATCCAGCGGGGCCTCTACACCGACTCGAGCACCTGTGACGTGACCGTGTCTTGTGGCCATGGCGAAAAGTCCCACCAGGCGCACAGATTTATCCTGTCCTCGTGCAGCGACTACTTCCGCGACATGCTGGCAGACATTCCCAACGACCAGGAGACGACAATTATTATTCCGGACCTCAAAGAGGCGATCCTGGACAGCGTGCTCAAGTTTATCTACTTGGGCGAAGTGTCCGTGAGATCGTCTAACCTTTCCGAATTCCTCGAGACCATGAATCTGCTCGGGATTAAGAGCGCAATCAGTTTCGATTGCCACCTGAACAAGAGGAAACCGACGAGCGTCTTCACCCCCGTCGAAGTCGAGACTATTGAGGTCGACAAGACGCCCCCCACTGAGGACGAGGAAACTGCCCCGGTGGAGAGCTGCGCCCCAAAGGACTTCGAATACTTGGAGGTGTACAACGATGAAGCAAAGATCGGACAATTCACGATAGAGCACATAGAGCAGGATTCCAACGGCGATTACATTTTGGGGGATAACTCTGAAAATTCCTTCCATCTAGCCGCTGAGGAGAAGAGCGGTGATATTAAAAACTCAGACTCGCTGCAGTTTAACGAGGACACCGCTGGCGACGATATCGTCATGAAGGAGGAGGACGACGAGGAGgaggaagaagaaaaatctCTGGATGAAAAAGATAAAGTGGACACCTCCTCTTTCAGTGATCTGATGCAAACACGAAACGCTGCATTTGAAGGGGCTGCCCGGGCGGTAATTGAGTGCGGCATGAGTCTCCAAAAAGCAGCCACAAAATTCAACATATCCAAAACAGTTCTCTGGCGGCGAGTGAAGAAACACCCTCAGTACAAAATATACAGGGAAAATCCGATTATAGTATCCGCGATTGAGAAACTCCAAAGAGGGGAATCTCTGAAGAGTATTAGCTCCGCCCTGGACATACCCATGTCAACCCTTCACAGACATAAAATGCGCCTCCACCAGGAGGGTCGTCTGCCCGAACATATGCAGGTTAAGAAGCGCGACTCCAAAGAGACCCTGAAGATGCGTCTCTCGAAAGCCGTTGAAGCATGCCGGCAGGGCATGTCCCAGAATCATGCAGCGAACGTGTTCGGTGTCCCCAAATCGACACTGTGGAGGCACCTTCAGAAGCAGAAGATAAAGGGCGAAATTATAGAAGAAGTCTCCCTCTCAATAGCCTCCTTTGCGAAAGATAAACAAGTAGTAAAAGAGGAACCAGACAGAGAAGATCCACTGCCGAGCTAA
- Protein Sequence
- MNHLKWMGHTDTVLEIQRGLYTDSSTCDVTVSCGHGEKSHQAHRFILSSCSDYFRDMLADIPNDQETTIIIPDLKEAILDSVLKFIYLGEVSVRSSNLSEFLETMNLLGIKSAISFDCHLNKRKPTSVFTPVEVETIEVDKTPPTEDEETAPVESCAPKDFEYLEVYNDEAKIGQFTIEHIEQDSNGDYILGDNSENSFHLAAEEKSGDIKNSDSLQFNEDTAGDDIVMKEEDDEEEEEEKSLDEKDKVDTSSFSDLMQTRNAAFEGAARAVIECGMSLQKAATKFNISKTVLWRRVKKHPQYKIYRENPIIVSAIEKLQRGESLKSISSALDIPMSTLHRHKMRLHQEGRLPEHMQVKKRDSKETLKMRLSKAVEACRQGMSQNHAANVFGVPKSTLWRHLQKQKIKGEIIEEVSLSIASFAKDKQVVKEEPDREDPLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183951; iTF_00628502; iTF_00937190; iTF_00937426; iTF_00628158; iTF_01256330; iTF_01256519; iTF_01049804; iTF_00717925; iTF_00717657; iTF_01049567; iTF_01461303; iTF_01461060; iTF_00936701; iTF_00936464;
- 90% Identity
- iTF_00717657;
- 80% Identity
- iTF_01183951;