Pcoq024932.1
Basic Information
- Insect
- Proctacanthus coquilletti
- Gene Symbol
- bab1
- Assembly
- GCA_001932985.1
- Location
- MNCL01000336.1:18943-20581[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.6e-15 3.8e-11 43.1 0.0 2 43 256 297 255 298 0.93 2 3 0.0012 5.4 7.4 0.0 9 39 310 339 305 345 0.72 3 3 1.4e-17 6.2e-14 52.0 0.0 4 39 364 398 363 402 0.94
Sequence Information
- Coding Sequence
- ATGAACCATTTGAAGTGGATCGACCACGCCGACACGGTGCTGGAAATCCAACGGGGTCTCTACAGCGACTCGAGCACCTGTGACGTGACCGTGGCGTGTGGCCATGGTGAGAAGAGCCATCAGGCTCATAGGTTCATCCTGTCGTCATGTAGCGACTACTTCCGCTCGATGCTGGCGGATATCCCGAACGGGGAAGAGATCACCATCATAATTCCTGACCTGAAGGAGACCCTAATGGACAGTGTGCTGAGATTTGTGTACCTGGGCGAGGTGTCGGTCCGGTCGTCCCACTTGTCCGAATTCCTCGAGACCATGAATCTGCTAGGCATCAAGAGCTCCATCAGCTTCGACTGTCACGTTAATAAGAGGAAGTCGACCAGCGTCTTCACACCCGTCGAAGTGGAGACAATCGAAGTGGAAAAGACACCCACTGAGGATGAGGAATCTGCTGCTGTCGAAAGCTGTGCCCCGAAGGATTTCGAATATCTGGAGGTGTACAACGAGGAGGCGAAGATAGGCCAGCTAACCATAGAACACATCGAGCAGGATTCGGACGGGGACTACATCCTGGGAGACAATTCGGAGCACTCCTTCCACCTCGCCGAGGAGAAGTCCGGCGATGTGAAACACACAGATGCCCTGCAATTCAACGACGACACCGCCGGCGACGACATGGTAACAATGAAGGAGGAGGACGAGGAAGAGAAATCCTTAGACGACAAGGACAAGGACCCGGCTTCTTTCAACGAGTTGATGCAGTCGCGAAATGCCGCCTTCGAGGGGGCTGTTCGGGCGGTCATCGAATGTGGCATGAGTCTACAGAAAGCGGCCACAAAATTCAACATATCGAAGACTGTGCTTTGGAGGCGCGTCAAAAAACACCCACAGTACCGCATCTACAGGGAGAACCCGATCATCTTGTCTGCGATCGAGAAGCTTCAAAGAGGCGAATCCCTAAAAAGTATCAGCACCGCCTTAGACATCCCGATGTCTACCTTGCATAGGCACAAAATGCGACTTCTCCAGGAGGGTCGTCTGCCCGAGCATATGCAGGTGAAGAAGCGCGACTCCAAGGAGACTCTGAAGATGCGCCTGAACAAGGCCGTCGAGGCGTGTCGGCAGGGTATGTCCCAGAACCAGGCGGCCAATGTCTTCGGTGTGCCCAAGTCTACGCTTTGGCGGCACCTCCAGAAGCAGAAGGGCAGCACAGAAATCATGGAGGATGTTTCCCTGTCCATAGCCTCGTTTGCGAAGGAGCCCAAGACCGACGTCAAAAACGAAGCCATTTGA
- Protein Sequence
- MNHLKWIDHADTVLEIQRGLYSDSSTCDVTVACGHGEKSHQAHRFILSSCSDYFRSMLADIPNGEEITIIIPDLKETLMDSVLRFVYLGEVSVRSSHLSEFLETMNLLGIKSSISFDCHVNKRKSTSVFTPVEVETIEVEKTPTEDEESAAVESCAPKDFEYLEVYNEEAKIGQLTIEHIEQDSDGDYILGDNSEHSFHLAEEKSGDVKHTDALQFNDDTAGDDMVTMKEEDEEEKSLDDKDKDPASFNELMQSRNAAFEGAVRAVIECGMSLQKAATKFNISKTVLWRRVKKHPQYRIYRENPIILSAIEKLQRGESLKSISTALDIPMSTLHRHKMRLLQEGRLPEHMQVKKRDSKETLKMRLNKAVEACRQGMSQNQAANVFGVPKSTLWRHLQKQKGSTEIMEDVSLSIASFAKEPKTDVKNEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183739;
- 90% Identity
- iTF_01256519;
- 80% Identity
- iTF_01256519;