Ncya031087.1
Basic Information
- Insect
- Neoitamus cyanurus
- Gene Symbol
- -
- Assembly
- GCA_947538895.1
- Location
- OX384540.1:55362337-55363714[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-14 5.3e-11 42.9 0.0 2 43 260 301 259 302 0.93 2 3 0.0047 5.2 7.7 0.0 8 39 313 343 309 349 0.75 3 3 1.5e-16 1.7e-13 50.9 0.0 5 39 369 402 368 406 0.95
Sequence Information
- Coding Sequence
- ATGAACCATTTGAAGTGGATGGGTCACGCCGATACGGTTCTGGAAATTCAACGGGGCCTCTACAGCGACTCGGGTACCTGTGACGTGACTATATCGTGTGGCCATGGCGAAAAGTCCCACCAAGCGCACAGGTTCATACTGTCGTCATGCAGCGACTACTTCCGCGAAATGCTGGCGGATATCCCCAACGGTCAAGAGACAACTATTGTAATCCCCGACCTTAAGCGAACAATTCTGGACAGTGTTCTGAAGTTCATTTACTTGGGCGAGGTGTCTGTGCGGTCGTCCAACCTGACCGAGTTCCTAGAAACCATGAACCTTCTGGGCATCAAGAGTGCCATTAGTTTTGACTGTCATTTGAACAAAAGGAAGCCGACCAGTGTGCTTACCCCAGTGGAGGTGGAGACTATTGAAGTTGAGAAAGCTCCCACTGAGGATGAGGAATCTGCCCCTGTGGAGGGCTGCGCCGCAAAGGACTTTGAGTATTTGGAGGTGTACAACGAGGAGGCGAAGATCGGACAGTTCACCATAGAGCACATCGAGCAAGATTCCAATGGTGACTACATTTTGGGAGAAAACTCCGAGAATTCCTTTCATCTCGCTGAAGACAAGAGTGGCGATTTAAAAAACTCCGACAGCTTGCAGTTTAACGAAGACACCGCCGGGGATGATATTGTAATGAAGGAAGAGGACGATGAGGAGGAGGAAGAAGAAAAGTCTTCAGACGACAAGGATAAAGGGGACACGTCTTCCTTTAGCGACCTGATGCAGTCACGGAATGCCGCCTTTGATGGGGCTGTTCGGGCTGTAATTGAGTGCGGCATGAGTCTCCAGAAGGCGGCCACAAAGTTCAGCATATCCAAAACAGTGCTATGGCGGCGCGTTAAGAAGCATCCTCAGTACCGAATATACAGGGAAAATCCAATTATCGTGTCTGCGATTGAAAAGCTCCAAAGAGGCGAATCTCTGAAGAGCATAAGCTCTGCCCTAGACATACCCATGTCCACCCTCCACAGGCACAAAATGCGCCTTCTACAGGAGGGCCGCCTGCCCGAGCACATGCAGGTGAAAAAGCGCGACTCCAAGGAGACCCTGAAGATTCGCCTGACTAAAGCCGTAGAGGCTTGCAGGCAAGGTATGTCCCAAAATCATGCAGCGAATGTTTTCGGAGTGCCCAAATCGACACTATGGAGGCATCTTCAGAAACAAAAAGTGAAGAACGAAGTCATGGAAGACGTCTCTCTGTCCCTAACTTCCTTTGCGAAAGATTCGAAACAGGCTCTAAAGGAAGAGGAAATTAGAGAAGATCCACTGCCAAGCTAA
- Protein Sequence
- MNHLKWMGHADTVLEIQRGLYSDSGTCDVTISCGHGEKSHQAHRFILSSCSDYFREMLADIPNGQETTIVIPDLKRTILDSVLKFIYLGEVSVRSSNLTEFLETMNLLGIKSAISFDCHLNKRKPTSVLTPVEVETIEVEKAPTEDEESAPVEGCAAKDFEYLEVYNEEAKIGQFTIEHIEQDSNGDYILGENSENSFHLAEDKSGDLKNSDSLQFNEDTAGDDIVMKEEDDEEEEEEKSSDDKDKGDTSSFSDLMQSRNAAFDGAVRAVIECGMSLQKAATKFSISKTVLWRRVKKHPQYRIYRENPIIVSAIEKLQRGESLKSISSALDIPMSTLHRHKMRLLQEGRLPEHMQVKKRDSKETLKIRLTKAVEACRQGMSQNHAANVFGVPKSTLWRHLQKQKVKNEVMEDVSLSLTSFAKDSKQALKEEEIREDPLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183739;
- 90% Identity
- iTF_00717657;
- 80% Identity
- iTF_01049804;