Matr010621.1
Basic Information
- Insect
- Machimus atricapillus
- Gene Symbol
- -
- Assembly
- GCA_933228755.1
- Location
- CAKOFS010000048.1:995272-996657[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-14 1.9e-11 44.4 0.0 2 43 261 302 260 303 0.93 2 3 0.0043 7.2 7.4 0.0 8 39 314 344 310 350 0.73 3 3 2e-16 3.3e-13 50.1 0.0 5 39 370 403 368 406 0.95
Sequence Information
- Coding Sequence
- ATGAACCATTTGAAGTGGATGGGCCACGCCGCTACGGTCCTGGAAATTCAACGGAGTCTCTTCGCAGACTCGAGCACTTGTGACGTGACCATATCGTGTGGCCATGGCGAAAAGTCCCACCAGGCGCACAAATTCATCCTGTCCACATGCAGCGACTATTTCCGGGACATGCTGGCGGACATTCCTAACGGCCAGGAGACGACAATTATAATCCCGGACCTCAAGGAGGCGATCCTCGACAGCGTCCTCAAGTTCATCTACTTGGGCGAAGTCTCTGTGCGATCGTCCAACCTCTCTGACTTCCTCGAAACGATGAATCTGCTCGGGATCAAGAGCGCTATCAGTTTCGACTGCCACCTGAACAAGCGGAAGCCACCGACTCTTTTTGGTCCCGTCGAGGTCGAGACCATTGAAATCGACAAGACCCCCCCAAATGAGGACGAGGAAACTGCTCCGGTCGAGGGTTGCGCCCCAAAAGACTTCGAGTACTTGGAAGTGTACAACGAAGAGGCTAAAATCGGGCAATTCACCATCGAGCACATCGAACAGGATTCTAACGGTGAATACATTTTGGGAGATAACTCTGAACACTCCTTCCACCTCGCTGCTGAGGAGAAAAGTGGCGATATTAAACAAGACGCGCTACAGTTTAACGAGGACACCGCTGGCGACGACATTGTCATGAAAGAGGAGGATGATGACGAGGAGGAAGAAGTAAAATCTCTCGACGACAAAGATAAAGGGGACAGCTCTTCATTTGGTGATTTAATGCAGTCCCGAAACGCCGCTTTTGACGGAGCCGTCCAGGCGGTAATTGAGTGCGGCATGAGTCTCCAGAAAGCAGCCACCAAATTCAACATATCCAAAACAGTTCTTTGGCGACGAGTCAAGAAGCACCCGCAGTACAGAATATACAGGGAAAATCCGATTATAGTTTCCGCGATTGAAAAACTCCAAAGGGGAGAATCCCTGAAGAGTATCAGCACCGCGCTAGACATACCGATGTCCACCCTACACAGGCACAAAATGCGGCTCCTCCAGGAGGGTCGTCTACCCGAGCATATGCAGGTTAAGAAACGCGACTCCAAGGAGACCCTGAAGATGCGCCTCTCGAAAGCCGTTGAAGCGTGTCGCCACGGAATGTCCCAGAATCATGCGGCGAACGTGTTCGGGGTCCCCAAATCGACACTTTGGAGGCATCTTCAAAAGCAGAAGGTAAAAACCGAAATTATTGAAGAAGTCTCCCTCTCGATAGCCTCCTTTGCGAAAGAGTCGAAGGACGTTAAGGAGGAGCCAGCCAGAGAAGATCCGTTGCCGAGCTAA
- Protein Sequence
- MNHLKWMGHAATVLEIQRSLFADSSTCDVTISCGHGEKSHQAHKFILSTCSDYFRDMLADIPNGQETTIIIPDLKEAILDSVLKFIYLGEVSVRSSNLSDFLETMNLLGIKSAISFDCHLNKRKPPTLFGPVEVETIEIDKTPPNEDEETAPVEGCAPKDFEYLEVYNEEAKIGQFTIEHIEQDSNGEYILGDNSEHSFHLAAEEKSGDIKQDALQFNEDTAGDDIVMKEEDDDEEEEVKSLDDKDKGDSSSFGDLMQSRNAAFDGAVQAVIECGMSLQKAATKFNISKTVLWRRVKKHPQYRIYRENPIIVSAIEKLQRGESLKSISTALDIPMSTLHRHKMRLLQEGRLPEHMQVKKRDSKETLKMRLSKAVEACRHGMSQNHAANVFGVPKSTLWRHLQKQKVKTEIIEEVSLSIASFAKESKDVKEEPAREDPLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183739;
- 90% Identity
- iTF_00717657;
- 80% Identity
- iTF_00936701;