Tcin011308.1
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- -
- Assembly
- GCA_959613345.1
- Location
- OY390707.1:48991895-48993276[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 9.6e-14 1.9e-10 41.6 0.0 2 43 260 301 259 302 0.91 2 3 0.0038 7.5 7.7 0.0 8 39 313 343 309 349 0.75 3 3 1.5e-16 3e-13 50.6 0.0 5 39 369 402 367 405 0.95
Sequence Information
- Coding Sequence
- ATGAACCATTTGAAATGGATGGGGCACGCCGATACGGTCCTGCAAATTCAGCGAGCCCTCTTCGCTGACTCGAGTACCTGTGACGTGATCGTGTCGTGTGGCCATGGGGAGAAATCCCACAAGGCACACAGATTCATCCTTTCCTCATGCAGCGACTACTTTCGCGACATGCTCGCTGACATTCCGAACGGCCAGGAGACGACAATTATTATCCCGGACCTCAAGGAGGCGATCCTCGACAGCGTCCTCAAGTTCATCTACTTGGGGGAGGTGTCCGTGCGGTCGTCCAACCTCTCCGAATTCCTCGAGACGATGAATCTACTCGGGATCAAAAGCGCCATCAGCTTCGACTGTCATCTGAACAAGCGGAAACCAAATAGCGTTTTCACCCCCGTCGAGGTGGCGACTATTGACGTCGATAAGACCTCCACCGAGGACGAGGAAACTACACCCGCGGAGAGTTGCGCCCCAAAAGACTTCGAGTACTTGGAGGTGTACAACGAGGAGGCAAAAATTGGACAATTCACCATCGAGCACATCGAGCAGGATTCCAATGGTGACTACATCTTGGCAGATAACTCTGAAAACTCCTTCCACCTCGCTGCCGAGGAAAAAAGCAACGACGTAAAACAAGATTCGTTGGAGTTTAACGAGGACACCGCTGGCGAAGACATCGCCATGAAAGAGGAGGACGACGAGGAGGAGGAAGAAGAGGAAAAATCTAATGACGACAAAGATAAAGGGGACTCCTCCTTTAGTGACTTGATGCAGTCGCGAAACGCCGCTTTTGACGGAGCCGTGCGAGCGGTGATTGATTGCGGAATGAGTCTTCAGAAAGCGGCCACTAAATTCAGCATATCCAAAACAGTTCTTTGGCGACGAGTCAAGAAGCACCCGCAGTACAGAATATACAGGGAGAATCCGATTATAGTCTCCGCGATAGAGAAACTCCAAAGGGGCGAATCCCTGAAGAGCATCAGCTCCGCGCTCGACATACCGATGTCCACCCTGCACAGGCACAAAATGCGCCTCCTTCAGGAGGGTCGTCTGCCCGAGCACATGCAGGTTAAGAAGCGGGACTCGAAGGAGACCCTGAAGATGCGCCTCTCGAAGGCCGTTGAAGCGTGTCGCCAGGGGATGTCCCAGAATCATGCGGCGAACGTGTTCGGTGTCCCCAAATCCACACTTTGGAGACACCTCCAGAAGCAGAAGGTAACGACAGAAATTATCGAAGAAGTCTCCCTCTCGATAGCCCCCTTTGCGAAAGATTCGAAGCAAGTTAAAGAGGAGCCAACCATAGAAGAAACGTCTCCGAGCTAA
- Protein Sequence
- MNHLKWMGHADTVLQIQRALFADSSTCDVIVSCGHGEKSHKAHRFILSSCSDYFRDMLADIPNGQETTIIIPDLKEAILDSVLKFIYLGEVSVRSSNLSEFLETMNLLGIKSAISFDCHLNKRKPNSVFTPVEVATIDVDKTSTEDEETTPAESCAPKDFEYLEVYNEEAKIGQFTIEHIEQDSNGDYILADNSENSFHLAAEEKSNDVKQDSLEFNEDTAGEDIAMKEEDDEEEEEEEKSNDDKDKGDSSFSDLMQSRNAAFDGAVRAVIDCGMSLQKAATKFSISKTVLWRRVKKHPQYRIYRENPIIVSAIEKLQRGESLKSISSALDIPMSTLHRHKMRLLQEGRLPEHMQVKKRDSKETLKMRLSKAVEACRQGMSQNHAANVFGVPKSTLWRHLQKQKVTTEIIEEVSLSIAPFAKDSKQVKEEPTIEETSPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01183739;
- 90% Identity
- iTF_00717657;
- 80% Identity
- iTF_01461303;