Pchl002644.1
Basic Information
- Insect
- Petrophora chlorosata
- Gene Symbol
- -
- Assembly
- GCA_951640565.1
- Location
- OX621189.1:17271943-17279774[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00072 0.065 14.5 2.6 2 23 204 226 203 226 0.96 2 28 0.00048 0.044 15.1 0.8 2 22 256 276 255 276 0.93 3 28 0.0001 0.0093 17.2 0.4 2 23 308 330 308 330 0.97 4 28 0.0012 0.11 13.8 0.9 1 23 389 412 389 412 0.96 5 28 0.015 1.3 10.4 0.1 1 23 429 451 429 451 0.96 6 28 0.0011 0.097 14.0 1.5 2 23 493 514 492 514 0.96 7 28 0.00024 0.022 16.0 3.6 2 23 556 578 555 578 0.97 8 28 6.3e-06 0.00057 21.0 1.3 1 23 628 651 628 651 0.97 9 28 0.0015 0.13 13.6 0.1 1 23 709 731 709 731 0.97 10 28 0.0021 0.19 13.1 8.0 1 23 742 764 742 764 0.98 11 28 0.037 3.3 9.2 1.6 2 23 776 797 775 797 0.96 12 28 0.0036 0.33 12.3 1.0 1 23 807 829 807 829 0.98 13 28 0.0079 0.71 11.3 3.3 1 23 857 879 857 879 0.94 14 28 0.0011 0.1 13.9 4.0 1 23 890 912 890 912 0.97 15 28 6e-05 0.0055 17.9 0.2 1 23 920 942 920 942 0.98 16 28 0.00021 0.019 16.2 0.6 2 23 962 984 961 984 0.97 17 28 0.03 2.7 9.4 0.2 1 23 1002 1024 1002 1024 0.94 18 28 0.11 9.8 7.7 3.3 1 23 1031 1053 1031 1053 0.97 19 28 0.041 3.7 9.0 1.3 2 23 1064 1086 1063 1086 0.95 20 28 0.0014 0.13 13.6 0.6 2 23 1109 1130 1108 1130 0.95 21 28 7.4 6.7e+02 1.9 3.9 2 23 1173 1195 1172 1195 0.94 22 28 0.081 7.3 8.1 0.2 2 23 1211 1232 1210 1232 0.90 23 28 0.018 1.6 10.2 4.4 3 23 1240 1260 1238 1260 0.97 24 28 0.015 1.4 10.4 0.8 2 23 1271 1293 1270 1293 0.95 25 28 0.084 7.6 8.0 0.4 2 23 1310 1328 1310 1328 0.89 26 28 0.24 22 6.6 0.4 2 23 1401 1422 1400 1422 0.93 27 28 0.0035 0.31 12.4 0.6 2 23 1433 1455 1432 1455 0.97 28 28 0.29 26 6.3 2.2 2 20 1493 1511 1493 1513 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGGAAATGTAGACTTTGTCTCAAGCTTGGGGACTTCTACTCCATCTTCACGGTCGACAATGCTGTGCAACTTTCGGAGATGGTTATGGAATGCTCCAGGataaaaGTATATGAAGGAGATGGCTTGCCTGACAAGGTTTGCTCGGAGTGCATACAAAAGCTTAGCAGTGCCTATATATTTAAGCAGCAATGCGAAAGAGCTGACCAGGAATTACGGCGGAACTATGAACCGCCACCAGGATTCAGTATCAGTCCACCTCCACCAAATAGACAGAGCAGCGATTCAGCATTCTCAACACACACCGACAGCTCTAACTTAAAATCATCAtttgttgaaaaaaaagtaACGCCGGCCAACCGAAGTAGGAAAAGAAGTATCGAAAGTGACAATGCCTCCGAAGCAAGCAGGTCGCAGGATTACAACCGGCCCAGCAGCTCTAAGCGGGTGGAGGAATTGCGGAGAACGCAGAAACGGCCACGGCTGTCCCGCAACCAATCTTGTGACTCGGATTACGAAGACAATGGAGGCTCCAGCTACGTCCCCGAAACGGATATGGAAGATTCAGACGAACCGCTCATCAAGCCCAATGAAATCAAATGCGATCTCTGCCCTAAGACGTTCAAATGGAAAAAAAGTTTAAAGCACCACATGAACAACATTCACACAAAGACGCAGTGCTTTGATGAAGTCGCCGCCGCCAGCACTCCTACAAGAAAAGAAATCGACTCGTTTGATGAAGACGAGAAAATAAGCTGTGACAAGTGCAACAAAACTTTCAAACTCAAGATTATGTTGAAGAGACACCAAGAAACGTGCGGTAAGTCGCCTGCGAAGTCGCCACAGAAGGAACTATTTATTTCCCTTGAACCTATCGACGCGGTGCACAAGATCACGGTCAAAAAACCCACCTGTGAATACTGCACGGCCAAATTTAAGACTGTGGAAAATCTCGAGAAACATCTCAGGGTCGTGCACGCGGCAGTtctaaaaaaagaacaaaaagaaGTGAAGCACGCAGCGGGCCAAAAATCCAAGGAAAACTCAAATGCGGTGACCATCCCGTGCATCTTTTGTATGCAGCCGTTCGATGACTATTATGTGCACAGTTCCCATTACAGTGTGTGTCCAAAGAAAGACTCCCGCTCGGAGTTCGAGTGTCCGTTATGTCAGAAGGTGTTGAGCCGGAAGAATAGCTATTTCCTTCACCTTAAGAACATTCACTTTGAGCCCCGCGCGGGTAAGCCGGCGCAGGCCTCCGCTTCAGCCTCCTTCGAGTGTCGCATATGCAGTAAGAAACTAGTTTCGCAAGAAATGCTGGTTACGCATTTAGCGGCGCACGCATCCAACATTGACGACGACAATGATATGGGCGCCGACGATTTAGAGTCGAGGCACAGTACCTTAGACGACTCCGAATCCGTTCGTTCGGAGCTAAGGACGCCTGTACCTGGCGCGCCACTAAAGTGTCGCGTCTGCGACAAAGAGTTCAAATATCGCAAATCGCTCGTCTCTCATGAATTGAAGCACACTGAACACGAGGTAAAGGTGAAAAACGAACCTCCGGACAAACCGTCGACGAGTTTACTGAGCGAGACCAATAATAGAGATTCTGATTTCGAATCCAGTCAAGACGAAGAGGCGGACGATCTCACCTGCGACATTTGTGAAAAGATGTTTTCGTACAAACGCCTGCTGCTGCACCACAAGAGGACTAAACACAATATGTCGTCTGGCACGAAGCGAGCGAAAATAAATCTTAAAGACTGCTCGGTAAGGTGTTTGCTCTGCGACTTGGAGATGAAAGTGAGCACCATCAATGAGCACAATCAGAAGCACATCTCTATGAACATCAAGCCGAGGAACATTTACACTTGTGCAGAGTGTGGACAGAAATTCAAAAGTTGCAGTAATTTAGCTAATCACATCAAGCTTGTCCATAGATTAAAACAGACTGGGGGCCAGGTGCCCCAGCCGTTCATCGGCGCGGACCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGAAATCCAGAGTCACAACGGCTTTGGTGAGGTTCCGTCACAGCAGGGGGCTCCAACAGTGAATCTCACCGGATTCACCTGCCCTATCTGTGGCAAGAAGATGGGCACGCTCATCTCTCTGAAACGGCACGTCAACTGGCACTCGTATGTCGGTAACAACCTTGAGAGTAAACACGAGTGTTTCGTTTGCAAAGAGACCTTCAAGTTCCAGCGGCACTACAAGATGCACATGCGCACGCACTACCACGACCCCAACCTGGACCCCGCACTACTGACGTGCTCCATCTGCAACCGGCGCTCCAAGCACCTCCGCGCGGCGCAGGCGCACATGAACTACCACAAGCAGACCCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCAAACGGGTCTTCCAGTATCGCAAAGTTTATCTATCGCACATGGCGATACATTACAAGAAAGGAGAGAGTGCGATGAATACGGTCGTGGGGGATATCATACCGAACTGTTCCAAGGCCGCCTTCGACGGGACTCACACGTGCCAGCTGTGCGGGAAGGTGTGTGAATCCGAGGTGTCCCTGAAGCACCATCTCGTGTGGCACAGGTCAAAGACGCTGCTGTTCGGCGCGCGGCACGAGTGCCAGATATGCCAGCTGCAGTTCACCAACAAGAGGCATCTGGAGCTACATACGCGCGCGCACTACGAGGACGAAAACGGGCCCTACAAGTGCAACATCTGCGGCAAGGGGTACATCGACGAGGAGTACATGCGGCGGCACGTCAAGGGGCACAACTTCGACCACCAGTCGCACAAGAAGCGCATCGAGAAGCTGCGCAAGGACAAGGTGAAGTGCCCCATCTGCTCGCGGTACTACCCCGACCTCGTGCATCTGATCCGCCATCTGCGCCGCACGCACCCCGAGAGCAAGATGATCAAGGAGGACCCtgacgcgccgccgcccgcctacTACTCCTGCAAGCTCTGCGCCAAGGTGTTCATGGACGAGCCGCGGCTCAAGAGGCACGAGGAGGCGCATCTGAGGAAACCGAACTTCTTCAAGTGCAAGTTCTGCGGGAAGAAGACGATCTCGCTCAAGAATCACAACGTGCACATCAAGGGACACCTGACGACCAAGCACACAGAGCGGCCGCTCAAGTGCCCGCAGTGCGACGAGCAGTTCGTGCTCGGGTACGCGCTGCATCACCACCTGCGCGACACGCACGGCATCACGGAGACGTGGGTCGCGGAGCGCGCCGACGAGGCGCTGGCCGGCCCGCTCGCCGAGCTGCAGTGCGCCGTCTGCCACAAGGTGCTCGCCAGCAAGGGCAACTTCGAGCGCCACCTCGACTACCACAACACGCTGCGCTGCAACTACTGCTCGGACTACTTCAGCGGCCTGCGCTTCCTCGAGGGCCACCTCGCCTTCAGCTGCCCCAAGAAGAAGCTCATCGGCGAGACCGAGGCGCACCCGCGCCGGATCAAGTGCCAGATCTGTTACAAGCCCTTCCACCTGCAGGTGAAGCTGGACTGCCACCTGCGCACGCAGCACGGCATGCGCGTGTGCCGGCAGCGGGAGCAGGGCCGCGCCGAGACCGTGTGCGACTACTGCTTCAAGGTGTTCGAGAACGAGTTCGCGCTCGCGGGGCACAAGGTGTACCACCGCACCGTCGGCTACTTCGGCTGCCGCTACTGCCCGCGCAAGTTCAACACGCAGACCGCCTACCGCAAGCACAAGAACCACCACTTCGCGCAGCTCAACGCCGACGAGCCGACCAAGTGCGAGCACTGCGACGAGACCTTCGTCGCCTTCCGCGAGATGATCTACCACATGCGCGACGTGCACGGCGACGACAAGGACTGGATCATCATGCCCAAGGACGCCGTGGAGGAGCGCTGCCCCATCTGCGACAAGGTGTTCCTCAACCTGCAGCGCCATCTCGGCTACCACGAGGAGAACCGCTGCAAGAAGTGCGGCGAGTACTTCCTGTCGATGGCGGACTGCGACGGCCACCTGTGCGCCATCGAGAGCGACTCCGAGGACCCGGCCTTCGGCGCTGAAACACCCGGGCGGCCCTACGAAGAGTGCACCTTCTGCTTCAAGCCGATCACGAAGAAGGACTCGAAGAAGAAGCACGACATCCTGCACCGCACGTCCGGCGCGATCTCGTGCCGGTTCTGCCCGCTCAAGTTCAAGACGATCGACGCGTTCAACATCCACGCGTTCTCGCACCGCAGCCGCAAGTATGTCAAGAAGCCGATCAAGTGCCGCGTATGCAAGGAGAAGTTCGTCAAGTACGGGCCCTTCATCCGGCACATGAAGACGGCGCACGGCTCCACCAAGAAGGTGCACTACCGCGCCGTGGTGCGCGCCGAGCGGTGCACGGTGTGCGGGGAGAGCCACCccaacctgcacaaccactaccGCGCGCACCTCGCCAACCGCTGCCAGCTGTGCCGCAAGTACTTCACGTCCAGCCGCCTGTACGCGCGCCACGAGTGCGACAAGGAGGACGCGGACCCTTCCAAGGTGTTCACGTCGGACGCGGACCTGCCGGCGCTCATCAACTCGTACATGCCCAAGGACGAGAAGGACGACGAGAAGTTCTACGGGTACACGGACGACGAGGACGAGGGCGAAGAGGACGAGTTCCCGGCGCAGCCGCCTCCGAAGGTCGTCAAGACGTACTCGAAGCCGCCGaagccgcctccgccgccgccgccgccgccgctcgacCGCCAGCAGGCGGCGGACGAGCGCGAGCTGCACGACATGGTGGTGTCGCCCATCATCTCGCACGTGCTGTCGCTGTACGACCCCGACACGAAGGAGAACGGCGACTTCGGTGAGGTCGTCGACCTCGCGGACGACGACTCGCTCGACGCGATCGACGTGCACGCGCCAGTCGTCGTCATCGACGATTCCAGTTAG
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLSEMVMECSRIKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYEPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFVEKKVTPANRSRKRSIESDNASEASRSQDYNRPSSSKRVEELRRTQKRPRLSRNQSCDSDYEDNGGSSYVPETDMEDSDEPLIKPNEIKCDLCPKTFKWKKSLKHHMNNIHTKTQCFDEVAAASTPTRKEIDSFDEDEKISCDKCNKTFKLKIMLKRHQETCGKSPAKSPQKELFISLEPIDAVHKITVKKPTCEYCTAKFKTVENLEKHLRVVHAAVLKKEQKEVKHAAGQKSKENSNAVTIPCIFCMQPFDDYYVHSSHYSVCPKKDSRSEFECPLCQKVLSRKNSYFLHLKNIHFEPRAGKPAQASASASFECRICSKKLVSQEMLVTHLAAHASNIDDDNDMGADDLESRHSTLDDSESVRSELRTPVPGAPLKCRVCDKEFKYRKSLVSHELKHTEHEVKVKNEPPDKPSTSLLSETNNRDSDFESSQDEEADDLTCDICEKMFSYKRLLLHHKRTKHNMSSGTKRAKINLKDCSVRCLLCDLEMKVSTINEHNQKHISMNIKPRNIYTCAECGQKFKSCSNLANHIKLVHRLKQTGGQVPQPFIGADLADFCEVVVTKAEPLDEIQSHNGFGEVPSQQGAPTVNLTGFTCPICGKKMGTLISLKRHVNWHSYVGNNLESKHECFVCKETFKFQRHYKMHMRTHYHDPNLDPALLTCSICNRRSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESAMNTVVGDIIPNCSKAAFDGTHTCQLCGKVCESEVSLKHHLVWHRSKTLLFGARHECQICQLQFTNKRHLELHTRAHYEDENGPYKCNICGKGYIDEEYMRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICSRYYPDLVHLIRHLRRTHPESKMIKEDPDAPPPAYYSCKLCAKVFMDEPRLKRHEEAHLRKPNFFKCKFCGKKTISLKNHNVHIKGHLTTKHTERPLKCPQCDEQFVLGYALHHHLRDTHGITETWVAERADEALAGPLAELQCAVCHKVLASKGNFERHLDYHNTLRCNYCSDYFSGLRFLEGHLAFSCPKKKLIGETEAHPRRIKCQICYKPFHLQVKLDCHLRTQHGMRVCRQREQGRAETVCDYCFKVFENEFALAGHKVYHRTVGYFGCRYCPRKFNTQTAYRKHKNHHFAQLNADEPTKCEHCDETFVAFREMIYHMRDVHGDDKDWIIMPKDAVEERCPICDKVFLNLQRHLGYHEENRCKKCGEYFLSMADCDGHLCAIESDSEDPAFGAETPGRPYEECTFCFKPITKKDSKKKHDILHRTSGAISCRFCPLKFKTIDAFNIHAFSHRSRKYVKKPIKCRVCKEKFVKYGPFIRHMKTAHGSTKKVHYRAVVRAERCTVCGESHPNLHNHYRAHLANRCQLCRKYFTSSRLYARHECDKEDADPSKVFTSDADLPALINSYMPKDEKDDEKFYGYTDDEDEGEEDEFPAQPPPKVVKTYSKPPKPPPPPPPPPLDRQQAADERELHDMVVSPIISHVLSLYDPDTKENGDFGEVVDLADDDSLDAIDVHAPVVVIDDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055856; iTF_00818512; iTF_00125303; iTF_01209559; iTF_01208519; iTF_00390620; iTF_00650236; iTF_00649344; iTF_00913824;
- 90% Identity
- -
- 80% Identity
- -