Ppul003289.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982950.1:6885644-6905534[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0029 0.48 12.6 1.2 2 23 204 226 203 226 0.95 2 26 0.0016 0.27 13.4 0.9 2 21 260 279 259 280 0.93 3 26 0.0001 0.017 17.2 0.4 2 23 316 338 316 338 0.97 4 26 0.0011 0.19 13.9 0.8 1 23 398 421 398 421 0.96 5 26 0.012 2 10.6 0.1 1 23 437 459 437 459 0.95 6 26 0.00033 0.055 15.6 0.9 2 23 502 523 501 523 0.96 7 26 0.00012 0.02 17.0 3.3 2 23 566 588 565 588 0.97 8 26 6.2e-06 0.001 21.0 1.3 1 23 638 661 638 661 0.97 9 26 0.00045 0.075 15.1 0.1 1 23 718 740 718 740 0.97 10 26 0.0049 0.81 11.9 7.2 1 23 751 773 751 773 0.97 11 26 0.036 6 9.2 2.0 2 23 785 806 784 806 0.96 12 26 0.0036 0.59 12.3 1.0 1 23 816 838 816 838 0.98 13 26 0.0075 1.3 11.3 5.2 1 23 866 888 866 888 0.96 14 26 0.0011 0.19 13.9 4.0 1 23 899 921 899 921 0.97 15 26 1.1e-05 0.0019 20.2 0.4 1 23 929 951 929 951 0.98 16 26 0.00016 0.026 16.6 0.8 2 23 971 993 970 993 0.97 17 26 0.32 53 6.2 0.2 1 23 1011 1033 1011 1033 0.92 18 26 0.23 38 6.6 3.7 1 23 1040 1062 1040 1062 0.96 19 26 0.0063 1 11.5 0.7 2 23 1073 1095 1072 1095 0.95 20 26 0.03 5.1 9.4 0.2 2 23 1118 1139 1117 1139 0.95 21 26 0.011 1.8 10.8 0.1 2 23 1220 1241 1219 1241 0.95 22 26 0.055 9.2 8.6 5.1 3 23 1249 1269 1247 1269 0.96 23 26 0.001 0.17 14.0 0.9 1 23 1279 1302 1279 1302 0.96 24 26 1.2 2.1e+02 4.3 3.0 2 21 1341 1360 1340 1361 0.93 25 26 1.3 2.2e+02 4.2 0.8 2 23 1410 1431 1409 1431 0.93 26 26 0.003 0.49 12.6 0.7 2 23 1442 1464 1441 1464 0.97
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTCGGAAAATGCAGGCTATGTCTCAAACTTGGCGACTTTTACTCCATTTTCACGGTCGACAATGGAGTGCAACTATCGGAGATGGTTATGGACTGTTCTAGAATAAAAGTATACGAAGGTGATGGATTGCCAGACAAGGTTTGTTCCGAGTGCATACAGAAGCTCAGCAGCGCCTACATATTCAAACAGCAGTGCGAGAGGGCTGATCAGGAGTTGCGCAGGAACTATGTTCCACCTCCAGGATTCAGTATCAGTCCGCCACCACCAAATAGACAAAGTAGCGATTCGGCCTTCTCGACGCACACCGATAGCTCCAACTTAAAGTCGTCATTCAACGAGATCAAAGTGACACCAGTTAACAGAAGCAGAAAAAGAAGCGTCGAGAGCGATAATGCTTCCGAAGCAAGCAGATCGCTTGATTATATTCGACCCAGTAGCTCGAAACGGGTCCAAGAGCTCCGTAGATCCCAGAAGCGGCCCCGACTCTCTGCCAACAACTCACAATGCGACTCGGATTACGAAGACAACGGCGGCTCCAGCTACGTCCCAGAAACAGATATAGATTCAGACGAACCACTCATCAAAACTAACGAGATAAAAtgcgatttctgtccaaaaacGTTCAAATGGAAAAAGAGCTTAAAAAACCACGTGAATAACATACACACTAATAAAGACATTCAAGTCAAGAGAGATAGTTTCGATAACGCCGCTTTCAGTACACCTAACAAAACTAATGATGAATCGTATGACGAAGAAAAAATGAGCTGTAGCCGAtgcgataaaacgtttaaactGAAGATTATGTTGAAGAGGCACCAGGATACGTGCGGAAAAACCCCTGTAAAGACGCCCGTGAAGTCGCCACAGAAAGAATTATTCATATCGTTGGAACCGATCGATGCGGTGCACAAGATCACGGTGAAAAAACCGACGTGTGAATACTGCACGGCTAAATTCAAAACCGTTGAAAATCTGGAGAAGCATCTCAGGGTAGTTCACGCGGCTGTTCTCAAAAAAGAAATGAAGGAGGCGAAACCCGCGCCTTTTGAGTCTCCGAAGTCTAAGGACCCAAATGCTGTTGCTGTTCCGTGCATCTACTGTAAGAAGCCATTCGATGACTACTACGTGCACAGTACTCACTTCAACGCATGTCCGAAGAAGGATACACGCCCTGTATTCGAGTGCCCCATATGCCACAAGGTAGCGAGTCGGAAGAACGGCTACTTTATCCATTTAAAGAACATCCACTTCGAGCCTCGCGCGAACAAGCCGCCTGAGGACACCGCGTCTTCCTTCGATTGCCGCATATGCAACAAAAAACTAGTCTCGCAAGAAGCGTTGGTCACGCATTTAGCAGCCCACGCGTCTAACATCGACGATGACAATGACGATAATGGCGCTGACGATGCCGACTCGAGACCGAGCACTTTGGACGATTCTGCATCCGTCCATTCGGCAATGAGCACGCCTGTGCCGGGAGCGCTACTGAAATGCCGCATTTGCGATAAAGAGTTCAAATACCGCAAAGCGCTCGAGACACATGAAATAAAACACACTGAAGACGAGTTAAGAGTGAAACAAGAGCCCCCCGACAAGCCATCGACGAGTCTACTAAGCGAGGTCAATAACAGAAGCTCGGATTTCGAATCTAGTCTAGACGACGAAGACGCGGACGATCTGACGTGCGACATTTGCGAGAAAATGTTTTCGTACAAACGGCTGCTAATTCACCACAAGAGAACAAAGCACAACATGTCGTCTGGGACGAAGCGAGCTAAAATCAACCTAAAAGACTGCTCCGTAAAGTGCTTGCTGTGCGATTTGGAGATGAAAGTGAGCACTATCAATGAGCACAATCAGAAGCACATCTCGATGAATATAAAACCGAGGAATATTTACACATGTGCAGAGTGTGGACAGAAGTTCAAGAGTTGCAGCAATTTAGCTAATCACATTAAGCTTGTTCATAGATTGAAACAGAACCAAGACCAGGTCCCGCAGCAGTTCATCGGCGCGGATCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGAAATCCAGAGTCACAACGGCTTTGGCGAGGTTCCGCTACAGGAGGCACCAACAGTGAACCTTAGCGGGTTCACGTGCCCCATCTGCGGCAAGAAAATGGCCACTCTCATCTCTCTAAAGCGTCACGTCAACTGGCACTCCTATGTGGGAAACAACTTAGAGAAGAAACATGAGTGCTTCGTTTGTAAAGAGACATTCAAATTCCAACGTCACTTCAAGCTCCACATGCGGGAGCATTACCACGACCCCTACATCGACCCCGTACACCTGACCTGCAAAATCTGCAACCGCAAGAGCAAACACCTCCGAGCTGCGCAGGCCCACATGAACTATCACAAGCAGACCCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCAAGAGAGTTTTCCAATATCGAAAGGTCTACCTCTCCCACATGgctatacattacaaaaaaggCGAGAGCGCGATGAACACCGTCGTAGGAGATATAATCCCCAACTGTTCCAAGTCGAACTTCGACGGAACTCACTCCTGCCATCTGTGCGGGAAGGTTTGCGAGTCGGAGGTTTCGCTGAAGCATCACCTCATCTGGCACAAGTCGAAGACCCTCCTGTACGGCGCTCGGCACGAATGTCAGATATGCCAGCTACAGTTCACTAACAAGCGGCACTTGGAGCTGCACACCCGCGCGCATTACGAGGACGAAAACGGGCCCTACAAGTGCAACATCTGCGGCAAGGGGTACTCTGACGAGGACTACATGCGGCGGCATGTCAAAGGACACAACTTCGACCACCAGTCACATAAGAAGCGGATCGAGAAACTTCGGAAGGACAAAGTCAAGTGTCCGATCTGTTCGCGCTTCTACGCGGACCTGATCCACCTAATCCGTCACTTGCGGCGCACTCACCCCGAGAGCAAGATGATCAAAGAAGATCCCGACGCGCCCCCTCCCGCTTACTACTCCTGCAAACTGTGTGCCAAAGTCTTCCTAGACGAGGGCCGGCTCAAGAGGCACGAGGATGCTCACCTGCGGAAGCCGAACTTCTTCAAGTGCAAGTTCTGCGGAAAGAAAACTATTTCGCTCAAGAACCATAATCTCCATATCAAGGGACATTTGACGACCAAACACGTCGACGAACCCCTGAAATGTCCCAAGTGCGACGAAGTGTTTATACTGGGGTACGCgttgcatcatcacttacgcgACGTGCACGAGATCAATGAGACATGGATCGCGGAACGGGCCGACGAGGCGCTCGCCGGCCCGCTGAAGGACTTGCAGTGTTCTGTCTGCATGAAGGTCCTCGCCAGCAAGGGCAACTTTGAGCGACATCTGGACTACCACAATTCTCTTCGTTGCAACTACTGCTATGACTACTTCAGCTCGCTCCGCTTCCTCGAAGGCCATCTTGTCTTCAGCTGCGACAAGAAAAAACTTATCGGCGACACGGAAGTGCACCCGCGTCGCATCAAATGCGAACTGTGTTACAAACCGTTCCACTTACAAGTGAAACTGGACTGCCATCTCCGCACGCAGCACGATATCAAGGTGGACCGACAAGAGTCCACCGGCCGCAAGGAGACGGTCTGCGACTACTGCTTCAAAGTGTTCGAGAACGAGTACGCTTTGGCAGGACACAAACTGTACCACCGCACCATCGGCTACTTCGGCTGCCTCTACTGCTCGCGCAAGTTCAACACGCAGACCGCCTTCCGCAAACACAAGAACCATCACTTCGCACAGCTCAACGTCGACGAGCCTTACAAATGTGAACACTGCGACGAGACCTTCGTCCCCTTCCGCGAGATGATCTACCACATGCGCGATGTGCACGACGACGATAAGGATTGGATCGTCATGCCCAAAGGCGTTACGGAGGAAATGTGCCCTATCTGCAACAAAATCATCCTCAACCTGCCGCGCCACATGGGCTACCACGAGGAAAACAAATGCAAGAAATGTAACGAGTACTTCTTCTCGCGCGTCGACTTCGACAACCACCTGTGCTCGATCGAAAGCGATGCCGAGGATGCGGCCTTCGGTATCGAGGTTACGGGCCAACCCTACGAAGAGTGCACTTTCTGCTTCAAGCCGATCACCAAGAAAGATTCCAAAAAGAAACACGACATGCTACACCGCACTTCTGGCGCGATATCCTGCAGATTCTGCTTCCTTAAGTTCAAGACCATAGACGCGTTCAACATCCACGCGTTCTCACACCGCAGCCGAAAGTACGTGAAGAAACCGATCAAGTGTCGCGAGTGCAAGGAGCGGTTTGTGAAATATGGCCCGTTCATAAAACACATGAAGACTGTTCACAAGTCGACTAAGAAGGTACATTACCGTGCCATCGTGAAGGCCGAGCGATGCGTTGTCTGCGGCGGCGAGTTTCCAAACCTCCATAACCACTACCGAGCCCATCTCGCCAACCGTTGCCAACAATGCCTCAAGTATATCAGCTCCTCGCGTTTATTCGCAAGACACGACTGCGATAAAGAGGACGCAGACCCCTCTAAAGTGTTCACGTCTGACGAGAACCTTCAAGCTCTTATCAACAACTTTGTACCTAAAGACGAGAAAGACGACGAGAAATTCTACGGGTACTCAGACGACGAAGACGAGGTCGAGGAGCCGGAGTTCCCGGAGCGGCCGCCGACCAAGGTGGTGAAGACTTACGCGAAGCCTACAAAGCTTCCCAAGCCGCCGCCGATTGACTCGCAGCAAGCAGAAGACGAAAGAAACTTGCACATGATGGTCGTGTCGCCGATTATATCGGACGTTCTGTCCCTGTATCAGAAACAGGAACACGACACCGACATTAAGGGACAGAACGGCGAGTTTGGAGAGATCGTCAACTTGGCCGATGATGACTCATTGGACGCGATCGATTTCAACGCGCCTGTCGTTGTCATCGACGattga
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNGVQLSEMVMDCSRIKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFNEIKVTPVNRSRKRSVESDNASEASRSLDYIRPSSSKRVQELRRSQKRPRLSANNSQCDSDYEDNGGSSYVPETDIDSDEPLIKTNEIKCDFCPKTFKWKKSLKNHVNNIHTNKDIQVKRDSFDNAAFSTPNKTNDESYDEEKMSCSRCDKTFKLKIMLKRHQDTCGKTPVKTPVKSPQKELFISLEPIDAVHKITVKKPTCEYCTAKFKTVENLEKHLRVVHAAVLKKEMKEAKPAPFESPKSKDPNAVAVPCIYCKKPFDDYYVHSTHFNACPKKDTRPVFECPICHKVASRKNGYFIHLKNIHFEPRANKPPEDTASSFDCRICNKKLVSQEALVTHLAAHASNIDDDNDDNGADDADSRPSTLDDSASVHSAMSTPVPGALLKCRICDKEFKYRKALETHEIKHTEDELRVKQEPPDKPSTSLLSEVNNRSSDFESSLDDEDADDLTCDICEKMFSYKRLLIHHKRTKHNMSSGTKRAKINLKDCSVKCLLCDLEMKVSTINEHNQKHISMNIKPRNIYTCAECGQKFKSCSNLANHIKLVHRLKQNQDQVPQQFIGADLADFCEVVVTKAEPLDEIQSHNGFGEVPLQEAPTVNLSGFTCPICGKKMATLISLKRHVNWHSYVGNNLEKKHECFVCKETFKFQRHFKLHMREHYHDPYIDPVHLTCKICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESAMNTVVGDIIPNCSKSNFDGTHSCHLCGKVCESEVSLKHHLIWHKSKTLLYGARHECQICQLQFTNKRHLELHTRAHYEDENGPYKCNICGKGYSDEDYMRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICSRFYADLIHLIRHLRRTHPESKMIKEDPDAPPPAYYSCKLCAKVFLDEGRLKRHEDAHLRKPNFFKCKFCGKKTISLKNHNLHIKGHLTTKHVDEPLKCPKCDEVFILGYALHHHLRDVHEINETWIAERADEALAGPLKDLQCSVCMKVLASKGNFERHLDYHNSLRCNYCYDYFSSLRFLEGHLVFSCDKKKLIGDTEVHPRRIKCELCYKPFHLQVKLDCHLRTQHDIKVDRQESTGRKETVCDYCFKVFENEYALAGHKLYHRTIGYFGCLYCSRKFNTQTAFRKHKNHHFAQLNVDEPYKCEHCDETFVPFREMIYHMRDVHDDDKDWIVMPKGVTEEMCPICNKIILNLPRHMGYHEENKCKKCNEYFFSRVDFDNHLCSIESDAEDAAFGIEVTGQPYEECTFCFKPITKKDSKKKHDMLHRTSGAISCRFCFLKFKTIDAFNIHAFSHRSRKYVKKPIKCRECKERFVKYGPFIKHMKTVHKSTKKVHYRAIVKAERCVVCGGEFPNLHNHYRAHLANRCQQCLKYISSSRLFARHDCDKEDADPSKVFTSDENLQALINNFVPKDEKDDEKFYGYSDDEDEVEEPEFPERPPTKVVKTYAKPTKLPKPPPIDSQQAEDERNLHMMVVSPIISDVLSLYQKQEHDTDIKGQNGEFGEIVNLADDDSLDAIDFNAPVVVIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172591;
- 90% Identity
- iTF_01208519;
- 80% Identity
- -