Pdol003735.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Plagodis dolabraria
Gene Symbol
-
Assembly
GCA_963854805.1
Location
OY978441.1:7503959-7516677[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0021 0.35 13.2 1.6 2 23 204 226 203 226 0.95
2 26 0.0018 0.29 13.4 0.9 2 21 261 280 260 281 0.93
3 26 7e-05 0.012 17.8 0.4 2 23 317 339 317 339 0.97
4 26 0.0002 0.034 16.3 1.6 1 23 399 422 399 422 0.98
5 26 0.0035 0.58 12.5 0.0 1 23 438 460 438 460 0.96
6 26 0.00065 0.11 14.8 0.9 2 23 503 524 502 524 0.96
7 26 0.00013 0.021 17.0 3.3 2 23 567 589 566 589 0.97
8 26 6.8e-06 0.0011 21.0 1.3 1 23 639 662 639 662 0.97
9 26 0.00049 0.081 15.1 0.1 1 23 719 741 719 741 0.97
10 26 0.0053 0.88 11.9 7.2 1 23 752 774 752 774 0.97
11 26 0.039 6.5 9.2 2.0 2 23 786 807 785 807 0.96
12 26 0.0039 0.64 12.3 1.0 1 23 817 839 817 839 0.98
13 26 0.0082 1.4 11.3 5.2 1 23 867 889 867 889 0.96
14 26 0.0012 0.2 13.9 4.0 1 23 900 922 900 922 0.97
15 26 1.3e-05 0.0022 20.1 0.4 1 23 930 952 930 952 0.98
16 26 0.00011 0.018 17.2 0.7 2 23 972 994 971 994 0.97
17 26 0.47 77 5.8 0.3 1 23 1012 1034 1012 1034 0.91
18 26 0.12 19 7.7 3.3 1 23 1041 1063 1041 1063 0.97
19 26 0.0068 1.1 11.5 0.7 2 23 1074 1096 1073 1096 0.95
20 26 0.033 5.5 9.4 0.2 2 23 1119 1140 1118 1140 0.95
21 26 0.012 1.9 10.8 0.1 2 23 1221 1242 1220 1242 0.95
22 26 0.017 2.9 10.3 3.8 3 23 1250 1270 1248 1270 0.96
23 26 0.016 2.7 10.3 0.8 2 23 1281 1303 1280 1303 0.95
24 26 1.1 1.8e+02 4.6 2.3 2 21 1342 1361 1341 1362 0.93
25 26 1.5 2.4e+02 4.2 0.8 2 23 1411 1432 1410 1432 0.93
26 26 0.0032 0.53 12.6 0.7 2 23 1443 1465 1442 1465 0.97

Sequence Information

Coding Sequence
ATGGCCCTCAAACTCGGAAAATGCAGGCTATGTCTCAAACTTGGTGACTTTTACTCCATTTTCACGGTCGACAATGGAGTGCAGCTCTCGGAGATGGTCATGGACTGCTCTAGGATAAAAGTATATGAAGGTGATGGATTGCCAGACAAAGTTTGTTCAGAGTGCATACAGAAGCTCAGCAGCGCCTACATATTCAAACAGCAGTGCGAGAGAGCTGATCAGGAGTTGCGCAGGAACTATGTTCCACCTCCAGGATTCAGTATCAGTCCGCCACCACCGAATAGACAAAGTAGCGATTCGGCCTTCTCAACGCACACCGATAGCTCCAACTTAAAGTCGTCATTCAATGAGATCAAAGTGACACCAGTTAACAGAAGCAGAAAAAGAAGCGTCGAGAGCGATAATGCTTCCGAAGCAAGCAGATCGCAAGATTATATTCGACCCAGTAGCTCGAAACGGGTCCAAGAGCTCCGTAGATCGCAGAAGCGGCCCCGACTCTCTGCCAACAACTCACAATGCGACTCGGATTACGAAGACAACGGAGGCTCCAGCTACGTCCCAGAAACAGACATAGATTCAGACGAACCACTCTTCAAAACTGACGAGTTAAAATGCGATTTCTGCCCAAAAACGTACAAATGGAAAAAGAGCTTAAAAAACCACATGAATAACGTACACACGAATAAAGAAATCCCACTCAAGAGAGATAGTTTCGATAATACCGCCGCTTTCAGTACACCTAACAAAACTAATGATGAATCCTATGACGAAGAAAAAATGAGCTGTAGCCGAtgcgataaaacgtttaaactGAAGATTATGTTGAAGAGGCACCAGGATACGTGCGGAAAAACCCCTGTAAAGTCGCCCGTGAAGTCGCCACAGAAagaattatttatatcattGGAACCGATCGATGCGGTGCACAAGATCACGGTGAAAAAACCAACATGTGAATACTGCACAGCTAAATTCAAAACCGTTGATAATCTGGAGAAGCATCTAAGGGTAGTCCACGCGGCTGTTCTCAAAAAAGAATTGAAGGAGGCGAAACCCGTGCCTTTCGAGTCTCCGAAATCTAAGGACCCAAATGCTGTTGCTGTTCCGTGTATCTACTGTAAAAAGACATTCTATGACTACTATGTGCACAGTACTCATTTCAACGAATGTCCGAAGAAGGATGTACGCCCTGTATTCGAGTGTCCCATATGCCATAAGGTGGCGAGTCGGAAGAACAGCTACTTTATCCACTTAAAGACCCTCCACTTCGAGCCTCGCGCAAACAAGGCGCCTGAGGACTCCGCGTCTTCCTTCGAATGCCGCATATGCGACAAAAAACTAGTCTCGCAAGAAGCGTTAGTCACGCATTTAGCAGCCCACGCGTCTAATATCGACGATGACAATGACGATAATGGCGCTGACGAGGCCGACTCCAGACCGAGCACATTGGATGATTCGGCGTCCGTCCATTCGGAAATGAGCACGCCTGTGCCTGGAGCGCCACTGAAATGCCGCGTTTGCGATAAAGAGTTCAAATACCGCAAAGCGCTTGAGACACACGAAATAAAGCACACTGAAGACGAGCTAAGAGTGAAACAAGAGCCCCCTGACAAGCCATCAACGAGTCTTCTAAGCGAGATAAATAATAGAAGCTCTGATTTCGAATCTAGTCTAGACGACGAAGACGCGGACGATCTGACCTGCGATATTTGCGAgaaaatgttttcatataaacggCTGCTAATTCACCACAAGAGGACAAAGCACAACATGTCGTCTGGCACGAAGCGAGCGAAAATCAACCTAAAAGACTGCTCCGTAAGGTGCTTGCTGTGCGATTTGGAGATGAAAGTGAGCACAATCAACGAGCACAATCAGAAGCACATCTCGATGAATATAAAACCGAGAAATATTTACACCTGTGCAGAGTGTGGACAGAAGTTCAAGAGTTGCAGCAATTTAGCTAATCACATTAAGCTTGTTCATAGATTGAAACAGCACCAAGATCAGGTCCCGCGGCAGTTCATCGGCGCGGATCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGAAATCCAGAGTCACAACGGCTTTGGCGAGGTTCCGCCACAGgGGGCACCAACAGTGAACCTAAGCGGGTTCACGTGTCCTATCTGCGGCAAGAAAATGGCCACTCTCATCTCTCTGAAGCGCCACGTGAACTGGCACTCCAATGTGGGAAACAACTTAGAGAAGAAACATGAGTGCTTCGTTTGTAAAGAGACGTTCAAATTCCAACGTCACTTCAAGCTCCACATGCGGGAGCATTACCATGACCCCAACATCGACCCCATACACCTGACCTGCAAAATTTGCAACCGCAAGAGCAAACACCTCCGAGCTGCGCAAGCCCACATGAACTATCACAAGCAAACGCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCAAGAGAGTTTTCCAATACCGAAAAGTCTACCTCTCCCACATGGCTATACATTACAAAAAAGGCGAGAGCGCGATGAACACCGTCGTAGGAGATATAATCCCCAACTGTTCCAAGTCGAGCTTCGACGGAACTCACTCCTGCCATCTGTGCGGGAAGGTTTGCGAGTCGGAAGTCTCGCTGAAGCATCACCTCATCTGGCACAAGTCGAAGACCCTCCTGTACGGCGCTCGGCACGAATGTCAGATATGTCAGCTGCAGTTCACTAACAAGCGGCACTTGGAGCTACACACCCGCGCGCATTACGAAGACGAGAACGGGCCCTACAAGTGCAACATCTGCGGCAAGGGCTACACTGACGAGGACTACATGCGGCGGCACGTCAAAGGGCACAACTTCGACCACCAGTCACATAAGAAGCGGATCGAGAAACTCCGGAAGGACAAAGTGAAGTGTCCGATTTGTTCACGCTTCTACCCGGACCTGGTCCACCTAATCCGTCACTTGCGGCGCACTCACCCGGAGAGCAAGATGATCAAAGAAGATCCCGACGCGCCGCCTCCAGCTTACTTCTCCTGCAAACTGTGTGCCAAAGTCTTCCTAGATGAGGGCCGGCTCAAGAGGCACGAGGATGCTCACCTGCGGAAGCCGAACTTCTTCAAGTGCAAGTTCTGCGGAAAGAAAACTATTTCGCTCAAGAACCATAATGTCCATATCAAGGGGCATCTGACGACCAAACACGTCGACCAACCCCTGAAATGCCCCAAGTGCGACGAAGTGTTTATACTAGGGTATGCgttgcatcatcacttacgcgACGTGCACGAGATCAACGAGACCTGGATCGCGGAACGAGCCGACGAGGCGCTGGCCGGCCCGCTGAAGGACTTGCAGTGCTCCGTCTGCATGAAGGTCCTCGCCAGCAAGGGCAACTTTGAGCGACATCTGGACTACCACAATTCTCTTCGCTGCAACTACTGCTATGACTACTTCAGCTCGCTCCGCTTCCTCGAAGGCCATCTTGCCTTCAGCTGCGACAAGAAAAAACTTATCGGCGACTCGGAAGTGCACCCGCGCCGCATCAAATGCGAGCTGTGTTACAAACCTTTCCACTTACAAGTGAAACTGGACTGCCATCTCCGCACGCAGCACGACATCAAGGTGGACCGCCAGGAGTCCACCGGCCGCAAGGAGACGGTCTGCGACTACTGCTTCAAGGTGTTCGAGAACGAGTACGCTCTGGCAGGGCACAAACTGTACCACCGCACCATCGGCTACTTCGGCTGCCTCTACTGCCCGCGCAAGTTCAACACGCAGACCGCCTACCGCAAACACAAGAACCATCACTTCGCACAGCTCAACGTCGACGAGCCGACCAAGTGTGAACACTGCGACGAGACCTTCGTCGCCTTCCGCGAGATGATCTACCACATGCGCGATGTGCACAACGACGATAAGGATTGGATCATCATGCCCAAAGGCGTTACGGAGGAAATGTGTCCTATCTGCAACAAAATCATCCTTAACCTGCCGCGCCACATGGGCTATCACGAGGAGAACAAATGCAAGAAATGCAACGAGTACTTCTTCTCGCGCGTCGACTTCGACAACCACCTGTGCGCGATCGAAAGCGACGCCGAGGATGCGGCCTTCGGTATCGAGACTTCGGGCCAACCCTACGAAGAGTGCACTTTCTGCTTCAAGCCGATCACCAAGAAAGATTCCAAAAAGAAACACGATATACTGCACCGGACTTCCGGCGCGATATCCTGCAGATTCTGCTTCCTGAAATTCAAGACTATAGACGCGTTCAACATCCACGCGTTCTCGCACCGCAGCCGGAAGTATGTCAAGAAACCGATCAAGTGCCGCGAGTGCAAGGAGCGGTTTGTGAAATATGGCCCGTTCATAAAACACATGAAAACTGTTCACAAGTCGACTAAGAAGGTTCATTACCGCGCTGTCGTTAAGGCCGAGCGATGCGTCGTCTGCGGCGGCGAGTTCCCCAACCTCCATAACCACTACCGAGCCCATCTCGCCAACCGTTGCCAACAATGCCTCAAGTATATCAGCTCCTCGCGTTTGTTCGCAAGACACGAGTGCGATAAAGAGGACGCAGACCCCTCTAAAGTGTTCACGTCAGACGAGAACCTTCAAGCCCTCATCAACAACTTTGTGCCTACAGACGAGAAAGACGACGAGAAGTTCTACGGGTACTCAGACGACGAAGACGAGGCCGCAGAGCCGGAGTTCCCGGCGCGGCCGCCGACCAAGGTGGTCAAGACTTACGCGAAGCCGGCGAAGCTCCCCAAGCCGCCGCCGATTGACTCGCAGCAGGCAGAAGACGAAAGAAACTTGCACATGATGGTCGTGTCGCCGATTATATCGGACGTTCTGTCGCTGTATCAGAAACAGGAACACGACGCCGACTCCAAGGGACAGAACGGTGAGTTCGGGGAAATCGTCAACTTGACCGATGACGACTCGTTGGACGCGACCGACATCAACGCGCCCGTCGTCGTCATCGACGattga
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNGVQLSEMVMDCSRIKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFNEIKVTPVNRSRKRSVESDNASEASRSQDYIRPSSSKRVQELRRSQKRPRLSANNSQCDSDYEDNGGSSYVPETDIDSDEPLFKTDELKCDFCPKTYKWKKSLKNHMNNVHTNKEIPLKRDSFDNTAAFSTPNKTNDESYDEEKMSCSRCDKTFKLKIMLKRHQDTCGKTPVKSPVKSPQKELFISLEPIDAVHKITVKKPTCEYCTAKFKTVDNLEKHLRVVHAAVLKKELKEAKPVPFESPKSKDPNAVAVPCIYCKKTFYDYYVHSTHFNECPKKDVRPVFECPICHKVASRKNSYFIHLKTLHFEPRANKAPEDSASSFECRICDKKLVSQEALVTHLAAHASNIDDDNDDNGADEADSRPSTLDDSASVHSEMSTPVPGAPLKCRVCDKEFKYRKALETHEIKHTEDELRVKQEPPDKPSTSLLSEINNRSSDFESSLDDEDADDLTCDICEKMFSYKRLLIHHKRTKHNMSSGTKRAKINLKDCSVRCLLCDLEMKVSTINEHNQKHISMNIKPRNIYTCAECGQKFKSCSNLANHIKLVHRLKQHQDQVPRQFIGADLADFCEVVVTKAEPLDEIQSHNGFGEVPPQGAPTVNLSGFTCPICGKKMATLISLKRHVNWHSNVGNNLEKKHECFVCKETFKFQRHFKLHMREHYHDPNIDPIHLTCKICNRKSKHLRAAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESAMNTVVGDIIPNCSKSSFDGTHSCHLCGKVCESEVSLKHHLIWHKSKTLLYGARHECQICQLQFTNKRHLELHTRAHYEDENGPYKCNICGKGYTDEDYMRRHVKGHNFDHQSHKKRIEKLRKDKVKCPICSRFYPDLVHLIRHLRRTHPESKMIKEDPDAPPPAYFSCKLCAKVFLDEGRLKRHEDAHLRKPNFFKCKFCGKKTISLKNHNVHIKGHLTTKHVDQPLKCPKCDEVFILGYALHHHLRDVHEINETWIAERADEALAGPLKDLQCSVCMKVLASKGNFERHLDYHNSLRCNYCYDYFSSLRFLEGHLAFSCDKKKLIGDSEVHPRRIKCELCYKPFHLQVKLDCHLRTQHDIKVDRQESTGRKETVCDYCFKVFENEYALAGHKLYHRTIGYFGCLYCPRKFNTQTAYRKHKNHHFAQLNVDEPTKCEHCDETFVAFREMIYHMRDVHNDDKDWIIMPKGVTEEMCPICNKIILNLPRHMGYHEENKCKKCNEYFFSRVDFDNHLCAIESDAEDAAFGIETSGQPYEECTFCFKPITKKDSKKKHDILHRTSGAISCRFCFLKFKTIDAFNIHAFSHRSRKYVKKPIKCRECKERFVKYGPFIKHMKTVHKSTKKVHYRAVVKAERCVVCGGEFPNLHNHYRAHLANRCQQCLKYISSSRLFARHECDKEDADPSKVFTSDENLQALINNFVPTDEKDDEKFYGYSDDEDEAAEPEFPARPPTKVVKTYAKPAKLPKPPPIDSQQAEDERNLHMMVVSPIISDVLSLYQKQEHDADSKGQNGEFGEIVNLTDDDSLDATDINAPVVVIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01172591;
90% Identity
iTF_01209559;
80% Identity
-