Lbim005143.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lomographa bimaculata
Gene Symbol
-
Assembly
GCA_948107665.1
Location
OX403588.1:3839680-3850186[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 7.7e-06 0.00053 20.7 1.8 2 23 208 230 207 230 0.97
2 28 0.0016 0.11 13.4 0.7 2 22 259 279 258 279 0.93
3 28 6e-05 0.0041 17.9 0.6 2 23 311 333 311 333 0.97
4 28 0.00065 0.044 14.6 0.6 1 23 393 416 393 416 0.96
5 28 0.016 1.1 10.2 0.1 1 23 432 454 432 454 0.96
6 28 0.0057 0.39 11.6 2.7 2 23 498 519 497 519 0.95
7 28 4.7e-05 0.0032 18.2 1.5 2 23 561 583 560 583 0.97
8 28 6.1e-06 0.00041 21.0 1.3 1 23 633 656 633 656 0.97
9 28 0.00044 0.03 15.1 0.1 1 23 714 736 714 736 0.97
10 28 0.012 0.82 10.6 7.7 1 23 747 769 747 769 0.98
11 28 0.034 2.3 9.2 1.1 2 23 781 802 780 802 0.96
12 28 0.0043 0.29 12.0 0.9 1 23 812 834 812 834 0.98
13 28 0.025 1.7 9.6 2.1 1 23 861 883 861 883 0.94
14 28 0.00057 0.039 14.8 4.8 1 23 894 916 894 916 0.98
15 28 3.9e-05 0.0026 18.5 0.4 1 23 924 946 924 946 0.98
16 28 8.3e-05 0.0056 17.4 0.3 2 23 966 988 965 988 0.97
17 28 1.2 81 4.3 0.2 1 23 1006 1028 1006 1028 0.89
18 28 8.4 5.8e+02 1.7 6.1 1 21 1035 1055 1035 1057 0.89
19 28 0.0086 0.58 11.1 0.8 2 23 1068 1090 1067 1090 0.95
20 28 0.03 2 9.4 0.2 2 23 1113 1134 1112 1134 0.95
21 28 0.013 0.89 10.5 0.1 2 23 1215 1236 1214 1236 0.94
22 28 0.027 1.9 9.5 3.8 3 23 1244 1264 1242 1264 0.96
23 28 0.009 0.62 11.0 1.1 2 23 1275 1297 1274 1297 0.95
24 28 0.53 36 5.4 0.2 2 10 1314 1322 1314 1332 0.79
25 28 0.13 9.2 7.3 1.6 2 21 1336 1355 1335 1356 0.94
26 28 0.45 31 5.7 1.9 2 23 1404 1425 1403 1425 0.93
27 28 0.0013 0.092 13.6 0.6 2 23 1436 1458 1435 1458 0.96
28 28 0.034 2.3 9.2 1.2 2 20 1496 1514 1496 1516 0.94

Sequence Information

Coding Sequence
ATGGCCCTCAAACTCGGAAAATGCCGACTGTGTCTCAAGCTCGGCGACTTCTACTCAATCTTCACGGTCGACAATGCCGTGCAACTCTCGGAAATGGTTATGGAATGCTCCAGGATTAAAATATACGAAGGAGATGGATTACCGGACAAAGTTTGCTCAGAATGCATACAGAAACTCAGCGGTGCATACATATTCAAGCAGCAATGTGAGAGGGCCGATCAAGAGCTGCGGCGGAACTATGTCCCTCCACCAGGGTTTAGTATCAGTCCACCACCACCAAATAGACAGAGCAGCGATTCGGCCTTTTCAACACACACAGACAGCTCTAACTTGAAATCTTCGTTTGTCGAGCACAAAGTAACACCAGTTAACAGAAATAGAAAACGGAGCGTCGAAAGCGACAATGCGTCGGAAGCGAGCCGGTCGCAGGATTACATGCGACCTAGCAGCTCGAAACGCGTGGAGGAGCTGCGGCGGACACAGAAACGGCCTCGACTGTCCTTGAACAACTCCAACAACTCACAGTGTGACTCCGACTACGAAGACAACGGGGGCTCCAGCTACGTGCCCGATACCGATATAGAAGACTCTGACGAACCTCTTATCAAACCCGACGAAATCAAATGTGAAATATGCTCTAAGACCTTCAAAATGAAAAAGTCATTGAACAACCACATGAAAAGCGTGCATAAAAAGGCCAAGTTCGATTCTATCACTAGCACTCCAATTAGTACTTTTAAACCTGCGGAAGAACCATTGGATGAAGAAAAAGTTAGCTGCGATCGTTGCAACAAAACATTCAAACTCAAGATCATGCTGAAGAGGCATCAGGAGACGTGCGGGAAAACGCCCGTGAAGTCACCACAGAAGGAGATCATTATCGCTCTGGAACCGATTGATGCCGTGCATAAAATAACAGTCAAGAAACCTACTTGCGAATACTGTACGGCCAAATTTAAAACCATGGACAACTTGGAGAAACATCTGAGAATAGTCCACGCGGCGGTGCTTAAGAAGGAGGCAAAGGAAGCTAAATCAACGCCAAAGACGCCGAAATTAAAAGGGGATTCTAACGCGCTGAGCATTCCGTGTATCTATTGTAACAAACCTTTTGACGACTACTACGTACACAGCGCTCACTTCAGCGTATGTACGAAGAAAGACGAGCGCTCGGTTTTTGAATGTCCCATCTGTCAGAAGATTCTCAGCCGGAAGAACAGCTACTTTATCCATCTAAAGAATGTTCACTTTGAGCCTAAGGCGAGTAAGCCCGACGTGGCAACACCTACGAATTTTGAATGCCGCATATGCAACAAGAAACTGGGCTCGCAGGAAATGCTCGTCACCCACTTGGCGGCGCACGCCTCGCATATAGAGGATGATGACGATATTGACATCGGCGTAGATGACGGTGATTCGAGGCCAAGCACAATGGATGACTCGGCATCCTTGCATTCAACGTCTGGTACCCCGGCGCCCGGAGGCTCTCTCAAATGCCGCGTGTGCGATAAAGAGTTCAAATATCGCAAAGCGCTCCACACACACGAATTGAACCATACCGCAGATGAAGTAAGAGTCAAAAACGAACCCCCAGATCCACGGAACCAAAGCTTGCTGAGCGAGACAAACCAAAACTCTGATTTTGAATCTAGTCAAGACGACGAGGACGAGGATGACCTCACGTGCGACATTTGTGAAAAGATGTTCTCCTACAAACGACTGCTCATACAACATAAAAGAACAAAGCATAACATGTCCTCTGGCACCAAGCGAGCGAAAATCAACCTAAAAGACTGTTCTGTAAGGTGCTTGCTGTGCGAATTGGAAATGAAAGTGAGCGACATCAATGAGCACAATCAGAAGCACATTTCCATGAACATAAAACCGAGGAATATTTATACCTGCGCCGAGTGCGGGCAGAAGTTCAAGAGTTGCAGCAATTTGGCGAATCACATCAAGCTTGTTCATAGGTTGAACAAGCAGAAGGACCAGGTGCCACGGCGGTACCTTGGCGCGGATCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGAAATCCAGAGTCACAACGGCTTTGGCGAGGTTCCGCCGCAGCAAGGGGCACCGACCGTGGATCTGAGCGGATTCACGTGCCCCATCTGTGGCAAGAAGATGGCGACGCTCATCTCTCTCAAACGACACGTCAACTGGCACTCGTACGTCGGAGCCAATCTTGAGAGGAAATTCGAATGTTTCGTCTGCAAAGAGACGTTCAAGTTCCAGTGTCACTACAAGCTGCACATGCGCGAGCACTACACCGACACCAACCTGGACTCGTCGTTCCTCACGTGCTCCATCTGCAACCGCAAGAGCAAACACCTCCGCGCGGCGCAGGCGCACATGAACTGGCACAAGCAGACGCGCTTCCAGAACAAGGACTACCAGTGTTCCATCTGCAAGCGCGTCTTCCAGTACCGCCGCGTCTACCTCTCCCACATGGCCATACATTACAAGAAGGGCGAGAGCGCCATGAACACGGTCGTCGGCGACAAGATCCCCACCTCCAAGACGCACTTCGACGGCACGCACACCTGCCAGCTCTGCGGCAAGGCCTGCGGGAACGAAATCGCGCTGAAGCACCATCTCGTGTGGCACAAGTCGAAGACTCTGCTCTACGGCGCGCGCCACCAGTGCCAGATGTGCCAGCTGCAGTTCACGAACAAGAGGCACCTCGAGCTGCACATCCGCGAGCACTACGAGGACGAGAACGGGCCCTACAAGTGCAACGTCTGCGGGAAGGGCTACATCGACGAGGAGTATATGCGCCGCCATCAGAAGGGCCACAACTTCGACCACCAGTCGCACAAGAAGCGGATCGAGAAGCTGCGCAAGGATAAGGTGAAATGTCCGATCTGCCCGCGGTACTACCCCGACCTGGTCCACCTGATCCGCCACCTGCGGCGCACGCACCCCGAGAGCAAGATGATCAAGCAGGACCCCGACGCGCCGCCGCCCGCCTACTTCTCGTGCAAGCTCTGCGCCAAGGTGTTCCTCGACGAGCCGCGGCTGCGCAAGCACGAGGCGGCCCACCTCCGCAAGCCCAACTTCTTCAAGTGCAAGTTCTGCGGGAAGAAGACGATCTCGCTCAAGAACCACAACCTGCACATCAAGTGCCACCTCACCACCAAGCACGTGGACAACCCGCTCAAGTGCCCGCAGTGCGACGAGGTGTTCGTGCTCGGGTACGCGCTGCACCACCACCTGCGCGACTCGCACGGCATCGCCGAGTCGTGGATCGCCGACCGCAACGACGAGGCGCTCGCCGGCCCGCTCAAGGAGCTCCAGTGCTCCGTGTGCATGAAGGTGCTCGCCAGCAAGGGCAACTTCGAGCGCCACCTCGACTACCACAACATGCTGCGCTGCAACTACTGCTACGACTACTTCAGCGGGCTGCGGTTCCTCGAGGGCCACCTCGCCTTCAGCTGCGACAAGAAGCGGCTCGTCGGCGACACGGAGCCGCACGCGCGGCGCGTCAAGTGCGAGCTGTGCTACAAGCCCTTCCACCTGCAGGTGAAGCTGGACTGCCATCTGCGCACGAGGCACGGCGTCTCCGTGCGGCGCCGAGCGCAGCCCGCCAGCACGGAGACCGTGTGCGACTACTGCTTCAAGGTGTTCGAGAACGAGTACGCGCTGGCCGGCCACAAGATCTACCACCGCACCGTCGGCTACTTCGGCTGCCTCTACTGCCCGCGCAAGTTCAACAACCAGACCGGCTACCGCAAGCACAAGAACCACCACTTCGCGCAGCTCAACGTCGACGAGCCCACGCAGTGCGAGCACTGCGACCGGACCTTCGTCGCCTTCCGCGAGATGATATACCACATGCGCGACGACCACGGCGACGACAAGGACTGGATCGTGATGCCGAAGGACGTCACCGAGGAGCGCTGCCCGATCTGCGACAAGGTGTTCCTGAACCTGCCGCGCCATCTGCAGTACCACGAGGAGAACAAGTGCAAGAAGTGCGGGGAGTACTTCTTCTCGCGAGCGGACTTCGACAACCACCTGTGCGCCATCGAGAGCGACGCCGAGGAGCCCGCGAGCTCGGAGGCCGCCGGGGCGCCCTACCAGGAGTGCACCTTCTGCTTCAAGCCGATCACGAAGAAGGACTCGAAGAAGAAGCACGACATCCTGCACCGCACGTCGGGGGCCATCTCGTGCCGGTTCTGCCACCTCAAGTTCAAGACCATCGACGCGTTCAACATCCACGCGTTCTCGCACCGCAGCCGCAAGTACGTCAAGAAGCCGATCAAGTGCCGCGAGTGCGGCGAGCGGTTCGTGAAGTACGGCCCCTTCATGAAGCACATGAAGTCCTCGCACAAGTCCACCAAGAAGGTGCACTACCGGGCTACGGTGCGCGCCGAGCGCTGCGTCGTCTGCGGCGGGGACTTCCCCAACTTGCACAACCACTACCGCGCGCATCTCACCAACCGCTGCCCGCGCTGCGACAAATACTTCATTTCGTCTCGGCTGTTCGCGCGACACGAGTGCGACAAGGAAGACGCCGACCCGGCCAAAGTGTTCACCTCGGACGAAAACCTGCTGGCTCTGATCAACTCGTACATCCCCAAGGACGAAAAGGACGACGAAAAGTTCTACGGCTACACCGACGACGAGGACGAGGCCGAGATCGAGGAGTTCCCGGCGCGAGCGCCCACTAAAGTCGTCAAGACCTACTCGAAGCAGAAGTCGAAACCGAAGCCGCCGCCGATAGATCTCCAGCAGGCGGAAGACGAGAGAAACCTCCACATGATGGTGCAGTCTCCGATCATTTCCGACGTGCTGTCGCTCTATCATAAGCAAGAGAAAGACCTCGACAGCAAGAGTCAGAGTGAGGAGTTCGGTGATGTCGTCAACCTCGCCGACGATGATTCTTTGGACGCTATCAACGTTGACGTGCCCATTGTCGTCATCGATGACTCCAGCTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNAVQLSEMVMECSRIKIYEGDGLPDKVCSECIQKLSGAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFVEHKVTPVNRNRKRSVESDNASEASRSQDYMRPSSSKRVEELRRTQKRPRLSLNNSNNSQCDSDYEDNGGSSYVPDTDIEDSDEPLIKPDEIKCEICSKTFKMKKSLNNHMKSVHKKAKFDSITSTPISTFKPAEEPLDEEKVSCDRCNKTFKLKIMLKRHQETCGKTPVKSPQKEIIIALEPIDAVHKITVKKPTCEYCTAKFKTMDNLEKHLRIVHAAVLKKEAKEAKSTPKTPKLKGDSNALSIPCIYCNKPFDDYYVHSAHFSVCTKKDERSVFECPICQKILSRKNSYFIHLKNVHFEPKASKPDVATPTNFECRICNKKLGSQEMLVTHLAAHASHIEDDDDIDIGVDDGDSRPSTMDDSASLHSTSGTPAPGGSLKCRVCDKEFKYRKALHTHELNHTADEVRVKNEPPDPRNQSLLSETNQNSDFESSQDDEDEDDLTCDICEKMFSYKRLLIQHKRTKHNMSSGTKRAKINLKDCSVRCLLCELEMKVSDINEHNQKHISMNIKPRNIYTCAECGQKFKSCSNLANHIKLVHRLNKQKDQVPRRYLGADLADFCEVVVTKAEPLDEIQSHNGFGEVPPQQGAPTVDLSGFTCPICGKKMATLISLKRHVNWHSYVGANLERKFECFVCKETFKFQCHYKLHMREHYTDTNLDSSFLTCSICNRKSKHLRAAQAHMNWHKQTRFQNKDYQCSICKRVFQYRRVYLSHMAIHYKKGESAMNTVVGDKIPTSKTHFDGTHTCQLCGKACGNEIALKHHLVWHKSKTLLYGARHQCQMCQLQFTNKRHLELHIREHYEDENGPYKCNVCGKGYIDEEYMRRHQKGHNFDHQSHKKRIEKLRKDKVKCPICPRYYPDLVHLIRHLRRTHPESKMIKQDPDAPPPAYFSCKLCAKVFLDEPRLRKHEAAHLRKPNFFKCKFCGKKTISLKNHNLHIKCHLTTKHVDNPLKCPQCDEVFVLGYALHHHLRDSHGIAESWIADRNDEALAGPLKELQCSVCMKVLASKGNFERHLDYHNMLRCNYCYDYFSGLRFLEGHLAFSCDKKRLVGDTEPHARRVKCELCYKPFHLQVKLDCHLRTRHGVSVRRRAQPASTETVCDYCFKVFENEYALAGHKIYHRTVGYFGCLYCPRKFNNQTGYRKHKNHHFAQLNVDEPTQCEHCDRTFVAFREMIYHMRDDHGDDKDWIVMPKDVTEERCPICDKVFLNLPRHLQYHEENKCKKCGEYFFSRADFDNHLCAIESDAEEPASSEAAGAPYQECTFCFKPITKKDSKKKHDILHRTSGAISCRFCHLKFKTIDAFNIHAFSHRSRKYVKKPIKCRECGERFVKYGPFMKHMKSSHKSTKKVHYRATVRAERCVVCGGDFPNLHNHYRAHLTNRCPRCDKYFISSRLFARHECDKEDADPAKVFTSDENLLALINSYIPKDEKDDEKFYGYTDDEDEAEIEEFPARAPTKVVKTYSKQKSKPKPPPIDLQQAEDERNLHMMVQSPIISDVLSLYHKQEKDLDSKSQSEEFGDVVNLADDDSLDAINVDVPIVVIDDSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01172591;
90% Identity
-
80% Identity
-