Asyr013694.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000165.1:2535558-2545068[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 2.6e-05 0.0021 18.8 0.5 2 23 205 227 204 227 0.96 2 27 0.00056 0.047 14.6 0.5 2 21 262 281 261 282 0.93 3 27 9.1e-05 0.0075 17.1 0.4 2 23 318 340 318 340 0.97 4 27 0.00035 0.029 15.3 0.5 1 23 400 423 400 423 0.96 5 27 0.004 0.33 11.9 0.5 1 23 444 466 444 466 0.96 6 27 0.00033 0.028 15.3 1.9 2 23 511 532 510 532 0.96 7 27 0.0002 0.016 16.0 3.6 2 23 575 597 574 597 0.97 8 27 4.3e-05 0.0035 18.1 1.5 1 23 647 670 647 670 0.97 9 27 0.0012 0.1 13.6 0.1 1 23 728 750 728 750 0.97 10 27 0.0036 0.3 12.1 4.2 2 23 762 783 761 783 0.96 11 27 0.055 4.5 8.3 1.8 2 23 795 816 794 816 0.96 12 27 0.0028 0.23 12.4 1.0 1 23 826 848 826 848 0.98 13 27 0.019 1.6 9.8 5.3 1 23 876 898 876 898 0.96 14 27 0.0026 0.22 12.5 4.6 1 23 909 931 909 931 0.97 15 27 5e-05 0.0042 17.9 0.2 1 23 939 961 939 961 0.98 16 27 0.00015 0.012 16.4 0.7 2 23 981 1003 980 1003 0.97 17 27 0.21 18 6.5 0.4 1 23 1021 1043 1021 1043 0.96 18 27 0.38 31 5.7 3.4 1 23 1050 1072 1050 1072 0.95 19 27 0.014 1.2 10.2 0.2 2 23 1083 1105 1082 1105 0.94 20 27 0.0028 0.23 12.4 0.2 2 23 1128 1149 1127 1149 0.95 21 27 0.062 5.2 8.2 0.2 2 23 1230 1251 1229 1251 0.94 22 27 0.15 12 7.0 3.6 5 23 1261 1279 1259 1279 0.94 23 27 0.013 1.1 10.3 0.8 2 23 1290 1312 1289 1312 0.95 24 27 0.017 1.4 9.9 0.7 2 23 1329 1347 1329 1347 0.91 25 27 1.1 95 4.2 0.8 2 23 1418 1439 1417 1439 0.93 26 27 0.0025 0.21 12.6 0.7 2 23 1450 1472 1449 1472 0.97 27 27 3.9 3.3e+02 2.5 1.2 2 20 1510 1528 1510 1530 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGTAAATGCAGGCTTTGCCTCAAGCTTGGCGACTTTTACTCAATTTTCACGGTTGATAATGCCGTGCAACTTTCGGAAATGGTTATGGATTGTGCAAGGATAAAAGTATATGAAGGCGATGGATTGCCAGACAAAGTTTGCTCTGAGTGCATTCAAAAGCTCAGCAGTGCCTACATATTCAAACAGCAATGTGAAAGAGCTGATCAGGAATTGCGCAGGAACTATGTACCACCTCCAGGGTTCAGTATTAGTCCACCACCACCGAATAGACAAAGTAGTGATTCGGCTTTCTCAACACACACCGACAGCTCAAATTTAAAATCGTCTTTTATTGAGAACAAAGTAACACCAGTCAGCCGGAGCAGAAAAAGAAGCGTCGAGAGCGACAATGTTTCCGAAGAAAGCAGGTCGCAAGATTTCAACCGACCTAGCAGTTCAAAACGAGTTGAGGAACTGCGTAGGTCTCAGAAACGACCGCGACTCTCTATCAATAACTCACAGTGCGACTCTGACTATGAAGACAACGGAGGCTCCAGCTACACTCCGGAAACAGATATAACAGATTCAGATGAACCCTTGATCAAACCCAATGAAATAAAATGTGAGGTCTGCGGCAAAAGTTTCAAATGGAAAAAGTCTTTGAAAGCTCACATGAATAACATACATGGGAAGAGAGATTCATATGTCAAGAAAGATAGTTTCCATGAAATTTCTGTAGACAGTACCCCTAAAAATACTGTCGCTGGAACATTCGAAGACGAGAAACTTAGCTGTAGTAGATGCGATAAAACCTTCAAACTAAAGATAATGTTAAATAGGCACATGGAATCCTGTGGCAAATCGCCTTTGAAGACGCCCATTAAGTCTCCACAAAAGGAGTTGTTAATATCTTTGGAGCCGATCGACGCAGTGCACAAGATCACGGTAAAAAAGCCGACATGCGAGTATTGCACGGCAAAATTCAAAACCGTAGAAAATCTGGAGAAGCATCTAAGAATCGTTCACGCGGCGGTCCTGAAAAAAGAAATAAGAGAGTCTAAGCCCGCATCGGTCAATAATTTGAAGTCCAAGGACCCAAATGCATTGTCTATTCCTTGCATCTTTTGTAAGAAACCGTTTGATGACTACTATGTGTACAGTTCTCACTTCAATTTGTGTCCGAAGAAGGAGTCACGCTCTGGATTCGAATGCCCCATCTGCCAGAAGGTTTCGAGCCGCAAGAACGGTTTCTTCATACACCTTAAGAATATCCACTTCGAGGCCCGCGCCAACGAGCGTAAGCCGGTGGTGGAAGAATCCCCTTCAGGAGAATTATTCAAATGTCGCATATGCAGCAAAAAATTAGTTTCGCAAGAATCTTTAGTCACGCATTTGACAGCGCACGCGTCTAACATAGACGATGAAATTGACGACAACGGAGCTGATGACGCTTATGTTGACTCCGGACCGAGCACAATGGACGATTCTGCATCGGTACATTCCCAGTCAAACACACCTGTACCAGGCGCACCACTAAAGTGCCACGTTTGTGATAAAGAGTTCAAATATCGTAAAGCGCTCGCCACACACGAAGAAAAGCACACTGAAGATGAGCTGAGAGTCAAACAAGAACCACCTGACAAAGCGTCCATGAGCCTTCTGAGTGAGGTGAATAACAGAAACTCTGATTTCGAATCTAGTCAAGATGACGAAGAAGCAGATGATTTGACTTGCGATATATGCGAGAAAATGTTTTCTTATAAACGGCTGCTTCTACACCACAAGAGAACAAAACACAACATGTCCTCTGGCACTAAGCGAGCGAAAATTAACCTAAAAGACTGCTCAGTGAAGTGTTTGCTGTGTGATGTGGAGATGAAAGTGAGCACCATAAACGAGCACAATCAGAAGCATATCTCAATGAATATCAAACCGAGAAATATATACACTTGTGCCGAGTGCGAACAGAAGTTTAAAAGTTGCAGCAATTTGGCTAATCATATAAAGCTTGTTCATAGGTTGAAGCAGAACCAAGACCAAGTTCCGCGTCAGTTCATGGGCGCGAATCTGGCGGATTTTTGTGAGGTCGTTGTGACGAAGGCGGAACCCCTGGACGAAATCCAGAGTCACAACGGCTTTGAGGAGGTTCCGTCACAGGGGGCAAAACCAGTGGTGGACCTAAACGGGTTCACGTGCCCCATCTGCGGCAAGAAAATGGGCACTTTGATCTCTCTCAAGCGCCACGTCAACTGGCACTCGAACGTCGGAAGCCACCTTGAGAAGAAACTAGAGTGCTTTGTTTGTAAAGAGAAATTTAGATTCCAACGCCACTACAAGCTTCACATGCGGGAACACTACCACGACCCCAACATCGACCCCAGTTTCCTCACATGTACCATTTGCAACCGCAAGAGCAAACACCTTCGCGGTGCGCAAGCGCACATGAATTATCACAAACAGACACGTTTCCAGAACAAAGACTATCAGTGTTCAATATGCAAGCGAGTTTTCCAGTATCGAAAAGTCTACCTCTCTCATATGGCTGTACATTACAAGAAAGGCGAAAGTGCTATGAATACAGTAGTAGGGGATAAAATCCCTAACAGTTCGAAGGCCAATTTCGACGGCACGCATTCCTGCCACCTGTGCGGAAAGATCTGCGATTCGGAGGTCTCGCTGAAGCATCACTTGATCTGGCATAAGTCAAAGACGTTACTGTACGGTGCGCGTCACGAATGTCAAATGTGCCAATTGCAGTTCACGAATAAGCGACACCTAGAATTGCACACACGCGCACATTTCGAAGATGAAAATGGTCCGTACAAGTGTAACATTTGTGGCAAAGGCTACATAGACGAGGAATACATGCGGCGGCACGTAAAGGGACATAACTTCGACCACCAGTCGCACAAGAAGCGGATCGAGAAACTCCGCAAAGGTAAGGTGAAGTGCCCGATTTGCTCCCGGTTCTACCCCGACCTCATTCATCTCATCCGACACTTGCGCCGCACTCACCCTGAGAGCAAGATGATCAAAGAAGATCCCGACGCGCCACCTCCCGCTTACTTTTCCTGTAAGCTCTGCGCTAAGGTATTCCTAGACGAAGTGCGTCTTAAAAGGCACGAGGAATCTCATTTGCGGAAGCCCAACTTCTTCAAGTGCAAGTTCTGCGGAAAGAAAACGATATCGCTCAAGACTCACAACGTCCACATTAAGGGGCACTTGACGACCAAACACGTAGAACAGCCGCTGAAGTGTCCCAAGTGCGACGAAGTGTTTATACTGGGGTACGCGTTGCATTACCACTTGCGGGACGTGCACGGGGTCAACGAGACCTGGATCGCGGAGCGCGGCGAAGAAACGCTCGCCGGACCGCTCAAAGATTTGCAGTGCTCCATCTGCCTTAAAGTGCTCGCCAGTAAGGGCAACTTCGAACGGCATCTAGACTACCACAACTCGCTCCGCTGCAACTACTGCTTCGACTACTTCAGCTCGCTTCGGTTCCTCGAGGGACATTTAGGTTTCAGCTGCGACAAGAAGAAGCTGATCGGGGATACCGAATTACACCCGAGACGGATCAAGTGCGAGCTTTGTTATAAACCGTTCCACCTACAAGTAAAACTGGACTGCCACCTGCGCACGCAGCACGCCATTACAGTGGACCGGCGCGCCTCCACGGGCTGCTCCGAGACGGTCTGCGACTACTGCTTCCGCGTGTTCGAGAACGAGTTCGCTCTGGCCGGACACAAGCTGTACCACCGCACCGTCGGCTACTTCGGCTGCATCTACTGTCCGCGCAAGTTCAACACGCAGACCGCCTACCGCAAGCACAAGAACCATCACTTCTCGCAACACAACGTCGACGAACCGACCAAGTGCGAGCACTGCGACGAGACCTTCGTCGCCTTCCGCGAGATGATCTATCACATGCGCGACGTGCACGGCGACGACAAGGATTGGATCGTAATGCCCAAGGACGCTATTGAAGAGAAATGTCCGATCTGCGACAAGGTCTTCTTCAACCTGCAGCGGCATCTCGGATACCACGAGCAGAACAAGTGCAAGAAATGCAACGAGTATTTCTTGTCGCGAGTGGATTTCGACAACCACCTGTGTGCGATCGAAAGTGACTCCGAAGACGCGGCTTTGGAGACGCCCGGTCAGGCTTACGAAGAATGCACCTTCTGTTTCAAGCCGATCACTAAGAAAGACTCCAAGAAGAAGCACGATATATTGCATCGGACGTCGGGCGCGATTTCGTGCAGATTCTGCTTCCTCAAGTTCAAGACTATAGACGCGTTTAATATCCACGCGTTCTCGCATCGCAGTCGGAAATACGTGAAAAAGCCGATTAAGTGCCGCGAATGCAAGGAACGATTCGTTAAGTACGGGCCGTTCATAAAGCATATGAAGACGGTCCACAAGTCGACGAAGAAAGTGCACTACCGCGCTGTCGTTAAAGCTGAGCGCTGCGTAGTCTGCGGGGGCGAGTTCCCCAATCTCCACAACCACTACCGCGCGCATCTCACGAACCGCTGCCAGCAGTGCAACAAGTATATCGCTTCTTCGCGGTTGTTCGCACGACACGAATGCGATAAAGAGGACGGTGATCTCTCCAAAGTATTCACATCTGATGAAAACTTGGTGGCGCTCATTAATTCTTACGTACCTAAAGATGAGAAAGATGACGAAAAGTTCTACGGGTACACTGACGATGACGACGACGCGGAACCGGAAGCCGAAACGGAGTTCCCGTCTCGTTCGACGGTGGCTAAAGTGGTCAAGACTTATTCCAAACCAGTGAAAGTTCCCAAGCCGCATATTGACTCTCAGCAGGCCGAAGACGAAAGGAACTTGCACATGATGGTGGTGTCGCCTATCATATCGGACGTGCTCTCGCTGTACCAGAAAAAGGAGCTAGATCCGGACAGCAAGACCCAGAATGGTGAGTTTGGAGATGTGGTCAACTTGGCTGATGATGACTCGTTGGACGCGGTGGATGTCAATGCGCCGGTTATTGTCATCGATGATTGA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLSEMVMDCARIKVYEGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNLKSSFIENKVTPVSRSRKRSVESDNVSEESRSQDFNRPSSSKRVEELRRSQKRPRLSINNSQCDSDYEDNGGSSYTPETDITDSDEPLIKPNEIKCEVCGKSFKWKKSLKAHMNNIHGKRDSYVKKDSFHEISVDSTPKNTVAGTFEDEKLSCSRCDKTFKLKIMLNRHMESCGKSPLKTPIKSPQKELLISLEPIDAVHKITVKKPTCEYCTAKFKTVENLEKHLRIVHAAVLKKEIRESKPASVNNLKSKDPNALSIPCIFCKKPFDDYYVYSSHFNLCPKKESRSGFECPICQKVSSRKNGFFIHLKNIHFEARANERKPVVEESPSGELFKCRICSKKLVSQESLVTHLTAHASNIDDEIDDNGADDAYVDSGPSTMDDSASVHSQSNTPVPGAPLKCHVCDKEFKYRKALATHEEKHTEDELRVKQEPPDKASMSLLSEVNNRNSDFESSQDDEEADDLTCDICEKMFSYKRLLLHHKRTKHNMSSGTKRAKINLKDCSVKCLLCDVEMKVSTINEHNQKHISMNIKPRNIYTCAECEQKFKSCSNLANHIKLVHRLKQNQDQVPRQFMGANLADFCEVVVTKAEPLDEIQSHNGFEEVPSQGAKPVVDLNGFTCPICGKKMGTLISLKRHVNWHSNVGSHLEKKLECFVCKEKFRFQRHYKLHMREHYHDPNIDPSFLTCTICNRKSKHLRGAQAHMNYHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAVHYKKGESAMNTVVGDKIPNSSKANFDGTHSCHLCGKICDSEVSLKHHLIWHKSKTLLYGARHECQMCQLQFTNKRHLELHTRAHFEDENGPYKCNICGKGYIDEEYMRRHVKGHNFDHQSHKKRIEKLRKGKVKCPICSRFYPDLIHLIRHLRRTHPESKMIKEDPDAPPPAYFSCKLCAKVFLDEVRLKRHEESHLRKPNFFKCKFCGKKTISLKTHNVHIKGHLTTKHVEQPLKCPKCDEVFILGYALHYHLRDVHGVNETWIAERGEETLAGPLKDLQCSICLKVLASKGNFERHLDYHNSLRCNYCFDYFSSLRFLEGHLGFSCDKKKLIGDTELHPRRIKCELCYKPFHLQVKLDCHLRTQHAITVDRRASTGCSETVCDYCFRVFENEFALAGHKLYHRTVGYFGCIYCPRKFNTQTAYRKHKNHHFSQHNVDEPTKCEHCDETFVAFREMIYHMRDVHGDDKDWIVMPKDAIEEKCPICDKVFFNLQRHLGYHEQNKCKKCNEYFLSRVDFDNHLCAIESDSEDAALETPGQAYEECTFCFKPITKKDSKKKHDILHRTSGAISCRFCFLKFKTIDAFNIHAFSHRSRKYVKKPIKCRECKERFVKYGPFIKHMKTVHKSTKKVHYRAVVKAERCVVCGGEFPNLHNHYRAHLTNRCQQCNKYIASSRLFARHECDKEDGDLSKVFTSDENLVALINSYVPKDEKDDEKFYGYTDDDDDAEPEAETEFPSRSTVAKVVKTYSKPVKVPKPHIDSQQAEDERNLHMMVVSPIISDVLSLYQKKELDPDSKTQNGEFGDVVNLADDDSLDAVDVNAPVIVIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01172591;
- 90% Identity
- -
- 80% Identity
- -