Papo013939.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000945.1:8643464-8645842[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 5.6e-07 5.7e-05 24.0 2.1 1 23 8 31 8 31 0.95 2 21 0.00038 0.039 15.1 0.3 2 23 37 59 36 59 0.95 3 21 1.5e-05 0.0015 19.5 0.3 2 23 68 90 68 90 0.97 4 21 2e-06 0.00021 22.2 2.5 2 23 99 121 98 121 0.95 5 21 2.9e-05 0.003 18.6 1.6 2 23 129 151 129 151 0.96 6 21 1.2e-05 0.0013 19.7 2.3 2 23 160 182 159 182 0.95 7 21 1.6e-06 0.00016 22.6 2.2 1 23 188 211 188 211 0.98 8 21 0.011 1.1 10.5 1.6 1 23 219 242 219 242 0.91 9 21 1.4e-05 0.0015 19.5 1.0 1 23 264 287 264 287 0.97 10 21 0.00075 0.076 14.1 0.4 1 23 316 339 316 339 0.97 11 21 2.3 2.3e+02 3.2 0.4 3 21 348 366 346 367 0.90 12 21 0.0081 0.82 10.9 1.6 2 23 376 398 376 398 0.95 13 21 0.011 1.2 10.4 5.0 1 23 423 446 423 446 0.96 14 21 0.00038 0.038 15.1 1.2 2 23 453 475 452 475 0.96 15 21 2.6e-05 0.0026 18.7 2.2 2 23 482 504 481 504 0.94 16 21 0.01 1 10.6 1.5 1 23 510 533 510 533 0.96 17 21 0.071 7.2 7.9 5.0 2 23 541 563 541 563 0.95 18 21 0.0008 0.081 14.0 0.2 1 23 570 593 570 593 0.97 19 21 0.0017 0.17 13.0 0.7 1 23 600 623 600 623 0.93 20 21 4.5e-05 0.0046 18.0 3.2 2 23 637 659 637 659 0.97 21 21 2.3 2.3e+02 3.2 0.2 2 17 680 695 679 696 0.88
Sequence Information
- Coding Sequence
- ATGTTTCACAATCAATTGGACTATGTGTGCGACTACTGTAGCCGAACCTTCACCCGGAAATACAATTTGCAGACTCATATTGAAAACTATCACATGAACTCCTCATGCTACTGTGATATATGCGACCAGAGGTTTGGCACACCGGCCGGACTACAGTTGCATCTCTCCAGAGGCCACAACAGATATGGCCAACCATTCCCAGAATGCGATCTGTGTGGTCGAATATTCACGAGGAAACAAAACATTACCTCACATATGATAACAGTACATTTGCAAGGCGTACGACCAGATATCAGATGCAAATTCTGCGACAAAACGTTCACCACAGAAAGGAATTTAAAGAGGCATCTGAATCAATTACACAATCCCCATTTAGAGTACCCCACTTGCGACAACTGTAATAAAGTTTTCAAGGGTAAACACTCCCTGATAGCCCACATTCAATCTACCCATAATGTTACTGAGAAGGGATTAATCAAGTGCCATCTCTGTGAAAAAGTTTACACAAATAATCGCAATTTGAAAAGGCATGTCGAAATGTTTCACGGTGAGAGAGGAGAATTCCGCTGTAATGTTTGCCCTAAAGTCTATACGTCTAATCAGAGCTTGAGGAGGCATACGAAGACTAGGCACAATCCTGAACATTGGACTCAATACAAGTGTGATTTCTGCAACAAAACGATAGTCGGAAAAGAGAATTTCAACAATCACGTCACTTTCTACCACAGGAAAAGCATTTACAGTTCAAATCAATATGAAGCTTTTGATTTTCGATCAAACTCTAGATCATTCATATGTAGCAAATGCAACAAAACGTTTAAAGAGGAACCTCTTCTGCGCCGCCATGTGAAAACGGAACATTCTTTTCAAGACTTCTATAGATATTGTAAAAAATCTCTTCTCAAATTAATGAAAGAGACCATGGAAACGTATaggaataatttttataattgcgAATTCTGCAGAAATGCTTTCCCCAGCATTTACGAATTAAAGGATCATATGAGAATCAATCATGGCAAAGAGTACAGCATCTCGAACTGTAATGTTTGCTTCAGCAAGTTCTATAGTAGAGAAAGTATGGTGGAGCATAAGAAAATCTGTCTGCCACCACCTAACGTAAATACTTGCAGCCACTGCGATAAACTTTTCACCGATATCTCCAGTCTTGAATTTCATGTGAGAATTTTTCATCCTCAAGCTCACATTGCCGATTCTGTAATTTCCTCCAGTAACATTGATGAAACCTCAATAGAACTCGGTTCTTACAAATGTGCCCACTGTGATCGTATTTACTACAGTGATAGGTCTTTAAAACATCACGTCAAACTAAAGCACACTACCGACGAGGCCATGGAATGTGGTTTTTGCAGGAAAGTCTGCAGTAATAAATATTACCTAGCATCGCACATCAAAATAGTGCACAACAACGACACTTGGTCCAAATGCGACTATTGTGACAAGCAGTTCAAGTCTAAAAGAAACATCCGACGCCATATAGAGTATACTCATCTGGGAATGCAAAGATATAAGTGTATCGAATGTGAGACTTTATTCAAGGAGAAGAGAAGCCTAAGAAAGCATGTTAGAATTAAACATCCCGATTCCACGTCTTTCCCTCAATGTCACATTTGTCAAAAGCGTTTTGAATCTGCTAAATCTTGCAAGATACATCTCAAATTACTCCATTCGTTCAATATGAACACGCATCCTTGCGATCTGTGCTCAGTGTCGTTCAATTCTGTCGACGCACTTAATATTCATCTACAAACCAACCATTTAGCAGAAGACGAAATCTATAAATGCGAAGTATGCAATCTGGTTTTCAAAGGCCAAGAAAAATTCGAACAACATAATCAATTGTCACATGTAAATTTAGTACAGAAGGTAAAGCGTAAAGTTTTGCCGCGTTGTGTCATATGCACAAAGGATTTCAGCACCAGGAAAACACTAAAGCGTCACATAAAGAAGTTCCACGAAGAATTCGATGTTGACGAATTAGCTGCCTCCGGTTGGCGGTTGAGGGAGACCAATGTTGAATGTGAAGACTGCATCAAAAGTTTCAACGACGAATTCCACTTTAATGTGTACCAAGAGCTGAAGCATTTGAGAGAATCTATCATATTCAAATGCGAAACATGCTTCTCATCTTACAATGCATTGGAATACTCCATTTTGAGGTATAAACTCGCCAATTTAAGTGGTTGTAAAAGTGAATTGATTTTAAGTGAGCTTTGCACTACAGAAATGAGTGATAGTGAAGTAACTCACAACGCCCAATCCACAGAGATCATGGAACCGGAGAGCACTACTAATGACATCAAAGTTGAGCCACCGGACGTTTTATATGAGATTAAGACTGAACCTATGTCTCCGTAA
- Protein Sequence
- MFHNQLDYVCDYCSRTFTRKYNLQTHIENYHMNSSCYCDICDQRFGTPAGLQLHLSRGHNRYGQPFPECDLCGRIFTRKQNITSHMITVHLQGVRPDIRCKFCDKTFTTERNLKRHLNQLHNPHLEYPTCDNCNKVFKGKHSLIAHIQSTHNVTEKGLIKCHLCEKVYTNNRNLKRHVEMFHGERGEFRCNVCPKVYTSNQSLRRHTKTRHNPEHWTQYKCDFCNKTIVGKENFNNHVTFYHRKSIYSSNQYEAFDFRSNSRSFICSKCNKTFKEEPLLRRHVKTEHSFQDFYRYCKKSLLKLMKETMETYRNNFYNCEFCRNAFPSIYELKDHMRINHGKEYSISNCNVCFSKFYSRESMVEHKKICLPPPNVNTCSHCDKLFTDISSLEFHVRIFHPQAHIADSVISSSNIDETSIELGSYKCAHCDRIYYSDRSLKHHVKLKHTTDEAMECGFCRKVCSNKYYLASHIKIVHNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPDSTSFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFNSVDALNIHLQTNHLAEDEIYKCEVCNLVFKGQEKFEQHNQLSHVNLVQKVKRKVLPRCVICTKDFSTRKTLKRHIKKFHEEFDVDELAASGWRLRETNVECEDCIKSFNDEFHFNVYQELKHLRESIIFKCETCFSSYNALEYSILRYKLANLSGCKSELILSELCTTEMSDSEVTHNAQSTEIMEPESTTNDIKVEPPDVLYEIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01155682; iTF_01158123; iTF_01159885; iTF_01154384; iTF_01157017; iTF_01158109; iTF_01159869; iTF_01157024;
- 90% Identity
- iTF_01155682; iTF_01158123; iTF_01159885; iTF_01154384; iTF_01157017; iTF_01158109; iTF_01159869; iTF_01157024;
- 80% Identity
- iTF_01154384;