Porl018058.2
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000053.1:605091-607465[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.5e-05 0.0038 19.5 0.3 2 23 32 54 32 54 0.97 2 19 2.1e-06 0.00052 22.3 2.5 2 23 63 85 62 85 0.95 3 19 8.8e-06 0.0022 20.3 1.2 2 23 93 115 93 115 0.96 4 19 1.3e-05 0.0032 19.8 2.3 2 23 124 146 123 146 0.95 5 19 1.8e-06 0.00045 22.5 1.8 1 23 152 175 152 175 0.98 6 19 0.012 3.1 10.4 1.1 1 23 183 206 183 206 0.91 7 19 2.9e-05 0.0073 18.7 0.6 1 23 228 251 228 251 0.96 8 19 0.00076 0.19 14.2 0.4 1 23 280 303 280 303 0.97 9 19 1.5 3.7e+02 3.9 1.7 3 21 312 330 310 331 0.91 10 19 0.0082 2.1 11.0 1.6 2 23 340 362 340 362 0.95 11 19 0.012 2.9 10.5 5.0 1 23 387 410 387 410 0.96 12 19 5.6e-05 0.014 17.8 0.9 2 23 417 439 416 439 0.96 13 19 2.6e-05 0.0065 18.8 2.2 2 23 446 468 445 468 0.94 14 19 0.01 2.5 10.7 1.5 1 23 474 497 474 497 0.96 15 19 0.072 18 8.0 5.0 2 23 505 527 505 527 0.95 16 19 0.0014 0.34 13.4 0.3 1 23 534 557 534 557 0.97 17 19 0.0032 0.8 12.3 1.5 1 23 564 587 564 587 0.92 18 19 4.6e-05 0.011 18.0 3.2 2 23 601 623 601 623 0.97 19 19 2.3 5.8e+02 3.2 0.2 2 17 644 659 643 660 0.88
Sequence Information
- Coding Sequence
- ATGTTCCACAATCAACTTTACAGGTTTGGCACACCGGCCGGACTACAGTTGCATCTCTTCAGAGGCCACAACAGATACGGCCAACCATTCCCAGAATGCGATTTGTGCGGTCGAATATTCACGAGGAAACAAAACATTACCTCTCATATGATAACTGTACATTTGCAAGGCGTGCGACCAGATATCAGATGCAAATTCTGCGACAAAACTTTCACCACAGAAAGGAATTTGAAGAGGCATCTGAATCAATTACACAATCCCCATTTAGAGTACCCCACTTGCGACGACTGTAACAAAGTTTTCAAGGGTAAACACTCCCTGATAGCCCACATTCAATCTACCCATAATGTTACTGAGAAGGGATTAATCAAATGCCATCTCTGTGAAAAAGTCTACACAAATAATCGGAATTTGAAAAGGCATGTCgaaatgtttcatggtgagagAGAAGAATTCCGCTGTGACGTTTGCCCTAAAGTCTATACCTCTAATCAGAGCTTAAGAAGGCATACAAAGACTAGGCATAATCCTGAACATTGGACTCAATACAAATGTGAATTCTGCAACAAAATCGTAATCGGAAAAGAGAATTTCAACAATCATGTCACTTTCTACCACAGGAAAAACATTTACAGTTCAAATCAATATGACACTTTTAATTTTCGATTAAACTCTAGACAATTTATTTGTAGCAAatgcaacaaaacatttaaagagGAACCTCTTCTGCGCCGTCATGTGAAAATCGAACATTCTTTTCAAGATTTCTATAGATATTGCAAAAAATCGCTTCTTGAACTAATGAAAGGGACCATGGAAACTTAtaggaataatttttataattgcgAATTCTGCAGAAATGCTTTCCCTAGCATTTACGAATTAAAGGATCATATGAGAATCAATCATGATAAAGACTACTGCCTCTCAAACTGCAACGTTTGCTTCTGCAAGTTCTACAGTAGAGAAAGTATGGTAGAGCATAAGAAAATATGTCTGCCACCACCTAACGTAAATACTTGCAGTCACTGCGATAAACTTTTCACCGATATCTCCAGTCTTGAATTTCATGTGAGAATTTTTCATCCCCAAGCTCACATTGCCGATTCTGTAATTTCCTCCAGTAACATTGATGAAACCTCAATAGAACTCGGTTCTTACAAATGTGCCCACTGTGATCGTATTTACTACAGTGATAGGTCTTTAAAACATCACGTCAAACTAAAGCACACTACCGAGGAGGCCATGCAATGTGGTTTTTGCGGGAAAATCTGCAGCAATAAATATTACCTGGCATCGCACATCAAAATAGTGCACAACAACGACACTTGGTCTAAATGCGACTATTGTGACAAGCAGTTCAAGTCTAAAAGAAACATCCGCCGCCATATTGAGTATACTCATCTTGGAATGCAAAGATATAAATGTATCGAATGTGAGACCTTATTCAAGGAGAAAAGAAGCCTCAGGAAGCATGTTAGAATCAAACATCCCAATTCCACGTCTTTCCCGCAATGTCACATTTGTCAGAAGCGTTTCGAATCCGCTAAATCTTGCAAGATACATCTCAAATTACTCCATTCGTTCAATATGAACACGCATCCTTGCGATCTGTGCTCAGTGTCGTTTAATTCTGTCGAAGCTCTTAACATTCATCTACAAACCAAACATTTAGCAGAAGACGAAATCTATAAATGCGAAGTATGCAATCTAGTTTTCAAAGGCCAAGAGAAATTCGAAcaacataataaattttcacaTGTCAATTTAGTACAGAAGACAAAGCGTAAAGTATTGCCGCGTTGTGTCATATGCACAAAGGATTTCAGCACTAGGAAAACACTAAAACGGCACATAAAGAAGTTCCACGAAGAATTCGATGCTGACGAATTAGCTACTTACGGTTGGCGGTTGAGGGAGACCAACGTTGAATGTGAAGACTGCATCAAAAGTTTCAACGACGAGTTCCACTTCAATGTGTATCAAGAGCTGAAGCATTTGAGAGAATCTATCATATTCAGATGCGAAACATGTTTTTCATCTTACAATGCATTCGAATACTCCATTCTGAGGTATAAACTCGCCAATTTAAGTAGTTGTAAAAGTAAATTGGTTTTAAGTGAGCTTTGCACTGCAGAAATGAGTGATAGTGAAGTAACTCACAACGCTCAATCCACCGAAATCATGGAACCGGAGAGCACCACTAATGACATCAAAGTTGAGCCACCGGATGTTTTATATGAGATTAAGACTGAACCTATGTCTCCGTAA
- Protein Sequence
- MFHNQLYRFGTPAGLQLHLFRGHNRYGQPFPECDLCGRIFTRKQNITSHMITVHLQGVRPDIRCKFCDKTFTTERNLKRHLNQLHNPHLEYPTCDDCNKVFKGKHSLIAHIQSTHNVTEKGLIKCHLCEKVYTNNRNLKRHVEMFHGEREEFRCDVCPKVYTSNQSLRRHTKTRHNPEHWTQYKCEFCNKIVIGKENFNNHVTFYHRKNIYSSNQYDTFNFRLNSRQFICSKCNKTFKEEPLLRRHVKIEHSFQDFYRYCKKSLLELMKGTMETYRNNFYNCEFCRNAFPSIYELKDHMRINHDKDYCLSNCNVCFCKFYSRESMVEHKKICLPPPNVNTCSHCDKLFTDISSLEFHVRIFHPQAHIADSVISSSNIDETSIELGSYKCAHCDRIYYSDRSLKHHVKLKHTTEEAMQCGFCGKICSNKYYLASHIKIVHNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPNSTSFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFNSVEALNIHLQTKHLAEDEIYKCEVCNLVFKGQEKFEQHNKFSHVNLVQKTKRKVLPRCVICTKDFSTRKTLKRHIKKFHEEFDADELATYGWRLRETNVECEDCIKSFNDEFHFNVYQELKHLRESIIFRCETCFSSYNAFEYSILRYKLANLSSCKSKLVLSELCTAEMSDSEVTHNAQSTEIMEPESTTNDIKVEPPDVLYEIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154409;
- 90% Identity
- iTF_01154409;
- 80% Identity
- iTF_01158109;