Pmne035483.1
Basic Information
- Insect
- Parnassius mnemosyne
- Gene Symbol
- -
- Assembly
- GCA_963668995.1
- Location
- CAVLGL010000087.1:16740111-16742486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.7e-07 5.6e-05 25.3 2.1 1 23 7 30 7 30 0.95 2 20 0.00047 0.099 15.1 0.3 2 23 36 58 35 58 0.95 3 20 1.9e-05 0.0039 19.5 0.3 2 23 67 89 67 89 0.97 4 20 2.5e-06 0.00053 22.2 2.5 2 23 98 120 97 120 0.95 5 20 1.6e-05 0.0033 19.7 1.2 2 23 128 150 128 150 0.96 6 20 1.5e-05 0.0032 19.7 2.3 2 23 159 181 158 181 0.95 7 20 2.2e-06 0.00046 22.4 1.8 1 23 187 210 187 210 0.98 8 20 0.0031 0.64 12.5 0.5 1 23 218 241 218 241 0.91 9 20 3.5e-05 0.0074 18.6 0.6 1 23 263 286 263 286 0.96 10 20 0.00093 0.19 14.1 0.4 1 23 315 338 315 338 0.97 11 20 2.8 5.9e+02 3.2 0.4 3 21 347 365 345 366 0.90 12 20 0.01 2.1 10.9 1.6 2 23 375 397 375 397 0.95 13 20 0.014 3 10.4 5.0 1 23 422 445 422 445 0.96 14 20 4e-05 0.0085 18.4 0.9 2 23 452 474 451 474 0.96 15 20 3.2e-05 0.0067 18.7 2.2 2 23 481 503 480 503 0.94 16 20 0.012 2.6 10.6 1.5 1 23 509 532 509 532 0.96 17 20 0.088 18 7.9 5.0 2 23 540 562 540 562 0.95 18 20 0.0017 0.35 13.3 0.3 1 23 569 592 569 592 0.97 19 20 0.0073 1.5 11.3 1.0 1 23 599 622 599 622 0.91 20 20 5.6e-05 0.012 18.0 3.2 2 23 636 658 636 658 0.97
Sequence Information
- Coding Sequence
- ATGTTCCACAATCAAGTTTACGTGTGCGACTACTGCAACCGCACCTTCACCCGGAAATACAATTTACAGACCCATATAGAAAACTATCACATGAACTCCTCATGCTACTGTGACATATGCGACCAGAGGTTTGGCACACCGGCCGGACTACAGTTGCATCTCTCCAGAGGCCACAACAGATACGGCCAACCGTTCCCTGAATGCGATTTGTGCGGTCGAATATTCACGAGGAAACAAAACATTACCTCTCATATGATAACTGTACATTTGCAAGGCGTGCGACCAGATATCAGATGCAAATTCTGCGACAAAACGTTCACCACAGAAAGGAATTTGAAGAGGCATCTGAATCAATTACACAATCCCCATTTAGAGTACCCCACTTGCGACGAgtgtaataaagtttttaagGGTAAACATTCCTTGATAGCCCACATTCAATCTACCCATAATGTTACTGAGAAGGGATTAATCAAATGCCATCTCTGTGAAAAAGTCTATACAAATAATCGCAATTTAAAAAGGCATGTCGAAATGTTTCATGGTGAGAGAGAAGAATTCCGCTGTGACGTTTGCCCTAAAGTCTATACGTCTAACCAGAGCTTAAGAAGGCATACAAAGACTAGGCATAACCCTGAACATTGGACTCAATACAAATGTGAAATCTGCAACAAAATCGTGATCGGAAAAGAGAATTTCAACAATCATGTCACTTTCTACCACAGGAAAAATATTTACAGTTCAAATCAATATGACGCTTTTAATTTACGATCAAACTCTAGACAGTTTATTTGTAGCAAATGCAACAAAACATTTAAAGAGGAACCTCTTCTGCGCCGTCATGTGAAAATCGAACATTCTTTTCAAGATTTTTATAGATACTGTAAAAAATCGCTTCTAGAATTAATGGAAGGGACCATGGAAACTTATaggaataatttttataattgcgAATTCTGCAGAAATGCTTTCCCCAGCATTTACGAATTAAAGGATCATATGAGAATCAATCATGATAAAGACTACTGCCTCTCAAACTGCAACGTTTGCTTCAGCAAGTTCTATAGTAGAGAAAGTATGGTAGAACATAAGAAAATCTGTCTGCCACCACCTAACGTAAATACTTGCAGCCACTGCGATAAACTTTTCACCGATATCTCCAGTCTTGAATTTCACGTGAGAATTTTTCATCCCCAAGCTCACATTGCTGATTCTGTAATTTCCTCTAGTAACATCGACGAAACCTCAATAGAACTCGGTTCTTACAAATGTGCCCACTGTGATCGTATTTACTACAGTGATAGGTCTTTAAAACATCACGTCAAACTAAAGCACACTACCGACGAGGCCAAGGAGTGTGGTTTTTGCGGGAAAGTCTGCAGTAATAAATATTACCTGGCATCGCACATCAAAATAGTGCACAACAATGACACTTGGTCTAAATGCGACTATTGTGACAAGCAGTTCAAGTCTAAAAGAAACATCCGACGTCATATTGAGTATACTCATCTTGGAATGCAAAGATATAAATGTATCGAATGTGAGACCTTATTCAAGGAGAAGAGAAGCCTCAGGAAGCACGTTAGAATCAAACATCCCAATTCCACATCTTTCCCGCAATGTCACATTTGTCAGAAGCGTTTTGAATCCGCTAAATCATGCAAGATACATCTCAAATTGCTCCATTCGTTCAATATGAACACGCATCCTTGCGATCTGTGCTCAGTGTCGTTCAATTCTGTCGAAGCTCTTAACATTCATCTACAAACTAAACATTTAGCAGAAGAGGAAATCTATAAATGCGAAGTATGCAATCTAGTTTTCAATGGCCAAGAGAAATTCGAACAACATAATCAATTTTCACATGTCAATTTAGTACAGACGATAAATCGTAAAGTATTGCCGCGTTGTGTCATATGCACAAAGGATTTCAGCACTAGGAAAACATTAAAACGGCACATAAAGAAGTTTCACGAAGAATTCGATGTTGACGAATTAGCTACCTACGGTTGGCGGTTGAGGGAGACCAACGTTGAATGTGAAGATTGCATCAAAAATTTCAACGACGAATTTCACTTCAATGTGTACCAAGAGCTGAAGCATTTGAGGGAATCTATCATATTCAGATGCGAAACATGTTTTTCATCTTACAATGCATTCGAATACTCCATTCAGAGGTATAAACTCGCCAATTTAAATACTTGTAAGAGTAAATTGATTTTAAGTGAGCTTTGCACTACGGAAATGAGTGATAGTGAAGTAACTCACCACGCCCAATCCACAGAGATCATGGAACCGGAGAGCACCACTAATGACATCAAAGTTGAGCCACCGGATGTATTATATGAGATTAAGACTGAACCTATGTCTCCGTAA
- Protein Sequence
- MFHNQVYVCDYCNRTFTRKYNLQTHIENYHMNSSCYCDICDQRFGTPAGLQLHLSRGHNRYGQPFPECDLCGRIFTRKQNITSHMITVHLQGVRPDIRCKFCDKTFTTERNLKRHLNQLHNPHLEYPTCDECNKVFKGKHSLIAHIQSTHNVTEKGLIKCHLCEKVYTNNRNLKRHVEMFHGEREEFRCDVCPKVYTSNQSLRRHTKTRHNPEHWTQYKCEICNKIVIGKENFNNHVTFYHRKNIYSSNQYDAFNLRSNSRQFICSKCNKTFKEEPLLRRHVKIEHSFQDFYRYCKKSLLELMEGTMETYRNNFYNCEFCRNAFPSIYELKDHMRINHDKDYCLSNCNVCFSKFYSRESMVEHKKICLPPPNVNTCSHCDKLFTDISSLEFHVRIFHPQAHIADSVISSSNIDETSIELGSYKCAHCDRIYYSDRSLKHHVKLKHTTDEAKECGFCGKVCSNKYYLASHIKIVHNNDTWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRIKHPNSTSFPQCHICQKRFESAKSCKIHLKLLHSFNMNTHPCDLCSVSFNSVEALNIHLQTKHLAEEEIYKCEVCNLVFNGQEKFEQHNQFSHVNLVQTINRKVLPRCVICTKDFSTRKTLKRHIKKFHEEFDVDELATYGWRLRETNVECEDCIKNFNDEFHFNVYQELKHLRESIIFRCETCFSSYNAFEYSIQRYKLANLNTCKSKLILSELCTTEMSDSEVTHHAQSTEIMEPESTTNDIKVEPPDVLYEIKTEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01154409;
- 90% Identity
- iTF_01154409;
- 80% Identity
- iTF_01157017;