Pdar012677.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013186455.1
- Location
- QDHC01006781.1:412124-427382[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-74 2.6e-70 237.2 23.7 1 264 82 349 82 373 0.85 2 2 1 1.9e+04 -6.7 17.6 1 49 373 420 373 446 0.70
Sequence Information
- Coding Sequence
- ATGGTGCGGCTGGGGCTGGCGATGGTAGTGGGAGTGGCGCCGGCGCTGGTGTCGTGGTGGCGCGGACAGGGACCCCAGCTGCCGCCGCCGCTCATCTCGCCCGTCTCGCCCGCCGTCACGCCGACCTCGGACAAGGCCCCCCGGTGGCCTCAGCACCGCTCGCCCTCCATCTCTGACTGTCTGCCCAGCAGCAGCGACGAGGAGTCAGCTCGCTCTATCGTTTGCCATGTGCGCCCCAAGATCGCGGAGCAGCGGCttgcggcgcggcgcgcggcgcgggcggagGCGCGCGAGATACGTATGCGCGAGCTGGAGAGGCAGCAGCGCGAGCAGGAAGACCATGCCGACAAGGCGTTCGATATGTACTCAGAAACAGTGGGGCGGCGCGGCGGACGGCTGGCAGCGCTCAGCCCCGCCGTGCACTCGCCGCGGCGCAGCTCCGAGGACTCCGCGGACGATGTTTTCAGCATCAAAGACCTCAGGCACGAGCTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGCATCGAGGAGCTCACAGAGGAACACGCGCAGTTGCAGCGTGAACATAAAGAAAAGTGCTCAGCGCATGAGCGACTAAAACGCGAGCACGCGAGTCTGGAGCGCGAGGTGACGGCGGCGCGGGACGCGGTGCGCGCGCGGGactccgccgccgccgccgcgggCTTCGCCTTCGTCGAGGCAGAGCTCAATGGTACAACTGAGCAGACGAAGCTCAACGGAGTGGAGCCGGAGCTGGTGGCGCAGGGCTTCGGCAGCGTGCCCCCGCTCGCCCTCGTCTCACACCACTCGGAACAGCTGCTCAATGATGCCGGAGAAGGCACACTGGACGTGCGGTTGCAGCGGCTGGTTAGCTCGAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGTGCCTGAACGAGGAGCGCGCCGCCAGACAGAACGGCGTCGCCGCGCACCACGACAGGGAGCACGACAGCGAGTTGGAGTCGCTGCGCAAATGCGTGTCGGAGGCGAAGGGtcgcgcggcgcgggcggagGCGGAGGCGGCGCTGCAGGCGGCGGCGGTGGCGCGCCTGGAGGCGCAGGTGGCCCGCCTGCGCGCGCGACAGGACCATCAGGACGAGCACGAGGAGCAGCTCAAGCAGGAGCGGCGCAAGCTGCAGCGGGAGGCTAGAGAAGCTTTGAACAGAGTTGAGGAGTTGGAGACGGAGAACAGCCACCTGACGAAGCGGCTCGACAAACTGAAGAACGCCAAGTCGGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MVRLGLAMVVGVAPALVSWWRGQGPQLPPPLISPVSPAVTPTSDKAPRWPQHRSPSISDCLPSSSDEESARSIVCHVRPKIAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAFDMYSETVGRRGGRLAALSPAVHSPRRSSEDSADDVFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELTEEHAQLQREHKEKCSAHERLKREHASLEREVTAARDAVRARDSAAAAAGFAFVEAELNGTTEQTKLNGVEPELVAQGFGSVPPLALVSHHSEQLLNDAGEGTLDVRLQRLVSSKQALESEVRKLKLCLNEERAARQNGVAAHHDREHDSELESLRKCVSEAKGRAARAEAEAALQAAAVARLEAQVARLRARQDHQDEHEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00651756;
- 90% Identity
- iTF_01142407; iTF_01402734; iTF_01494324; iTF_01145278;
- 80% Identity
- -