Pbia000182.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:8772112-8776800[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.026 1.7 9.0 5.6 1 23 141 164 141 164 0.96 2 17 1.5e-05 0.001 19.2 0.5 1 23 173 196 173 196 0.97 3 17 0.021 1.4 9.4 0.4 2 23 209 231 209 231 0.97 4 17 8.4e-05 0.0056 16.9 1.8 1 23 240 263 240 263 0.96 5 17 5.3e-05 0.0035 17.5 1.2 1 23 275 298 275 298 0.96 6 17 1.2e-05 0.00077 19.6 0.6 2 23 324 346 323 346 0.96 7 17 0.00086 0.057 13.7 1.2 2 23 356 378 355 378 0.96 8 17 0.011 0.76 10.2 0.6 2 20 383 401 382 403 0.92 9 17 0.0029 0.19 12.0 0.5 2 21 408 427 408 430 0.94 10 17 0.033 2.2 8.7 2.2 3 23 440 461 438 461 0.95 11 17 4.7e-05 0.0031 17.7 3.1 1 20 466 485 466 489 0.91 12 17 0.00022 0.014 15.6 0.6 2 23 501 523 500 523 0.96 13 17 0.51 34 5.0 0.8 1 23 542 565 542 565 0.89 14 17 0.27 18 5.8 0.1 2 23 572 593 571 593 0.87 15 17 0.00027 0.018 15.3 1.1 2 23 600 621 599 621 0.96 16 17 0.0053 0.35 11.2 0.2 1 23 687 709 687 709 0.96 17 17 0.12 8.1 6.9 2.0 1 23 715 738 715 738 0.96
Sequence Information
- Coding Sequence
- ATGTCTGATCTTACCGATGTTGAAGATTTAACCGTGAAAAGACAAGACCCTACGTCTTTTTTACCAGAGGAGGCAATGTCATATGAATTGAAACCAAAAAGGAAGAAGAAAAAAAAGAAAAATAGTCAAGAAGATCCATTTAAAGATTTGGAAGTAGCCAACTCGTCAACAGAAATAAATTTTGATCCTGAAGTCAACATTAAAGTCGAAAATATTGAAGTTGAGTTGGACTTTAACGATTTTACCAATGATAATGGATTAATGCTGGAAGGTATTAACAGCGAAGATAGTCAGGAGCCAATCGTTAAATTAGAGCAACAGAACCGTGAAGCTGTAATATTAACATTTGAAAATGTAGTCAGTGATAATTCTGTGTTTAATTATAACCAACCGGTCGATACGAAGATCTTAGGACCGACACATATGTGTAAAGTATGTCATCTAGTGTTTCAATCTATAAGAACATTAAAAATGCACCAAAAGCGGAAGCACAAAATATTCAGAAGGCATTTTGAACATGTATGTGAGAGTTGTGGAATGGCTTACGATCAGAAAAGCAGTCTGATTGCTCATATTAGGAGAAAACATGGCCCGGATTCACTACCCGATGACAGAGAAGAAAGGACATGTGATATATGTGCGCTTGTCTTTAAAGGTATGCCACGATTACGCATGCATATGCGTAGAAAGCATGGATCCTTTGAAGATGCATTTCAACATGCATGCAAAGATTGTGGACTTACATATGACAAATATCGAAGTTTAATAGTACATATGCGGAGGAAACATAATGGTGATAATAAACCTGTTATCGAACAGTGGTTTAATTGTCCATTTTGTCCTAAAGCGTTCACTAAACGTGAAACTTACGCAAGACATGTGCAAAGAAAACATCAAGTGGATGAAGATATGCATACAAGTGATCAGGTTTTATTGGAAAATTCCAAAAATGAACAAACCGGAGAAGTCTCTTGTAAAGAGTGCCCTCTAGTATTTTCCTCATTGAACTACCTTAAGTTACACATGCGAAGGAAACATAATGCTTTAAAAGATAATTTCAGACTCAAATGTAGAATTTGTAATCTATCATATGATAAAATAGAAAGCTTAAAGCGTCATGTAAGAAGGAAACACGACAAAGGTTCGTATTGCGAAGTGTGCAATAAACAATTTGATACCAGAGAGTTATATTTAAACCACACTCACATAAAAATGATAAGAGAATGCTCAATTTGTGGCTTAATATTCGCTTCTAAAGCTGGTTTGGGTAAACATTTACGTTGTACCCACAAAATAGATTCACCGAAAACAATTTTCTGTCATATATGTAATGCAGGGTTCCATGACAAGCGGCAACTGAAGCCACATTTGATGAAAGTGCATTTAAAAGTGTCATACACTTGTGTACATTGCGGTAAAATATTTAAAAGCAAGGAAAGTTATAGGCGTCACGTTGTATTTAAACATCCAATGAAAAATATAGTTCACAGTCAATTACAAAAATGTGAACATTGTTCCGAGAGTTTTGAGGATGAGTTTGAGTTATCCAGACATGTGAATGTAGCGCACGGACAACAAATAAATGAAATCATAATCAAAAAGGAGGAAGATATAAAAGATTCATTTCAATGCTCGAAATGTTCAGATTCATTTCTAAGTTGGGAATTACTTAAGTTACATTTTGCACAAAACCATCTTATAATTAAAGACACACAGTGTCAAGTTTGTGGTCAAGTTGTCCCTGATAATGAACTACAAAAGCACATTAAAGCCAAACACACAGAAATGGCAACATTAGAGTGTAAATATTGTGAATATAAAACAACATCTCGGGGAAGTTTAACACAACATTTGTTAAGACACAAAAATGCTACAACGTTAAACTGTGAAATGGAGGGTTGCAGATATAAAACATTTTACGAAGTTGCCATGTTGAAACATAAGAAAAAACATACAGAACAAGGTGTTAAATTGCAATGTTCTAAGTGTTCCTTCCAAAGTATGAATAAATATATTTTAAAATACCACGAAGAAGCACATTTGACTGGTAAAAAGAAATATGCATGCGATAAATGTGATTACTCAACAATATTACCAGCAAATTTGGTGCAACACAAATATAAACATTCAACGGAAAAGAAATTCAAATGTGAAGTTTGTCCGTTTGCTACAAAATATAATACTTCGTTACGGTTCCATGTTAAGAAGAAACATTGTGATCTACCCTCCTTCAGTTAG
- Protein Sequence
- MSDLTDVEDLTVKRQDPTSFLPEEAMSYELKPKRKKKKKKNSQEDPFKDLEVANSSTEINFDPEVNIKVENIEVELDFNDFTNDNGLMLEGINSEDSQEPIVKLEQQNREAVILTFENVVSDNSVFNYNQPVDTKILGPTHMCKVCHLVFQSIRTLKMHQKRKHKIFRRHFEHVCESCGMAYDQKSSLIAHIRRKHGPDSLPDDREERTCDICALVFKGMPRLRMHMRRKHGSFEDAFQHACKDCGLTYDKYRSLIVHMRRKHNGDNKPVIEQWFNCPFCPKAFTKRETYARHVQRKHQVDEDMHTSDQVLLENSKNEQTGEVSCKECPLVFSSLNYLKLHMRRKHNALKDNFRLKCRICNLSYDKIESLKRHVRRKHDKGSYCEVCNKQFDTRELYLNHTHIKMIRECSICGLIFASKAGLGKHLRCTHKIDSPKTIFCHICNAGFHDKRQLKPHLMKVHLKVSYTCVHCGKIFKSKESYRRHVVFKHPMKNIVHSQLQKCEHCSESFEDEFELSRHVNVAHGQQINEIIIKKEEDIKDSFQCSKCSDSFLSWELLKLHFAQNHLIIKDTQCQVCGQVVPDNELQKHIKAKHTEMATLECKYCEYKTTSRGSLTQHLLRHKNATTLNCEMEGCRYKTFYEVAMLKHKKKHTEQGVKLQCSKCSFQSMNKYILKYHEEAHLTGKKKYACDKCDYSTILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01144015; iTF_01142569; iTF_01145468; iTF_01147586; iTF_01140373; iTF_01144736; iTF_01149791;
- 90% Identity
- -
- 80% Identity
- -