Pdar018592.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01002264.1:100687-105379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0077 0.61 10.7 5.8 1 23 140 163 140 163 0.96 2 17 2.4e-05 0.0019 18.6 1.0 1 23 172 195 172 195 0.97 3 17 0.044 3.5 8.4 0.6 2 23 208 230 208 230 0.97 4 17 0.00036 0.029 14.9 1.2 1 23 239 262 239 262 0.95 5 17 3.8e-05 0.003 18.0 1.2 1 23 274 297 274 298 0.96 6 17 3e-06 0.00024 21.5 0.3 2 23 323 345 322 345 0.96 7 17 0.00088 0.07 13.7 1.2 2 23 355 377 354 377 0.96 8 17 0.031 2.4 8.8 0.6 2 20 382 400 381 402 0.92 9 17 5.4e-05 0.0043 17.5 0.1 2 23 407 429 407 429 0.97 10 17 0.7 56 4.6 2.5 3 23 439 460 437 460 0.95 11 17 0.011 0.88 10.2 6.9 1 23 465 488 465 488 0.94 12 17 5.1e-05 0.004 17.6 0.3 2 23 500 522 499 522 0.97 13 17 0.0048 0.38 11.4 0.8 1 23 541 564 541 564 0.91 14 17 1 81 4.1 0.2 2 23 571 592 570 592 0.84 15 17 5.3e-05 0.0043 17.5 1.9 2 23 599 620 598 620 0.97 16 17 0.04 3.2 8.5 0.2 2 23 686 707 685 707 0.95 17 17 0.5 39 5.0 3.1 1 23 713 736 713 736 0.96
Sequence Information
- Coding Sequence
- atgtcagaAGTAATTGAAGATTTAACAGTAAAAAGGCAAGATCCTACAACATTTCTACCAGAAGAGGCAATGTCTTACGAATTGAAACCGaagagaaaaaagaaaaaaaagaaacgtaAACAAGAGGATCCTTTCAAAGATCTAGACGAAGTTACAGATTTCTCGACAGAAATAACATTAGATCCCGAAGTCAATATCAAAGTGGAGAATATTGAAGTTGAATTGGATTTCAATGATTTTACCAATGACAATGGACTTATGCTGGAAGGTATTCACAGTGAAGATAGTCAGGAACCGATCGTCAAATTGGAACAACAGAACCGTGAAGCTGTTATTCTAACATTCGAAAGTGTGATCAGTGATAAATCAGTGTTTAATTATAACCAGCCTAGTGAAACGAAGATCATAGGAACGACACATATGTGTAAAATATGCCATTTAGTATTTCAATCTACCCGCACATTGAAAATGCATCAAAAAAGAATGCACAAAGTATTTAGACGGGCGTTTGAACATGTCTGTGAAAGTTGTGGTATGTCTTACGATAGAAAAACCAGCTTGATTGCTCACATAAGACGAAAACATGGACCAAATGCATTACCAATTGATAGAGAGGAAAGGACATGTGATGAATGTGCATTAGTCTTCAAAGGTATGACAAGACTACGCCTGCATATGCAAAGAAAGCATGGTTCATTCGATGAATCATTTCAACATGCGTGTCAAGATTGTGGTCTTACTTATGAAAAATATCGAAGTTTGATCGTACATATGCAAAGAAAACATAGTGTTAATAACAAACCGATTATCGAACAATGGTTTAGTTGTCCATTTTGTCCGAAAGCGTTCGCTAGACGTGAAGCTTATGCTAAACATGTACAAAGAAAACATCACGTTGATGATAAGAAGGATAATAATGATTCGATTTTATCACAGAATACACGAAACGAACAAACAGGAGAAATTTCTTGTGAAGAGTGCCCTCTAGTGTTTTCATCGTTGTCCTATTTAAAGTTACACATGAGAAGGAAACATAACgcttttaaagataatttcaGACTCAAATGTAGAATTTGTAATCTATCGTACGATAAAATTGAAAGCTTAAAGCGTCACGTACGAAGGAAACACGACAAAGGATCCTACTGCGAAGTGTGCAGTAAACAATTCGATACCagagaattatatttaaatcatacacatattaaaatgattagaGAATGCTCAATTTGTGGATTAATATTCGCCTCTAAGGCCAGTCTGGGTAAACATTTACGATCTACCCACAAAATAGATTTGCCAAAAACGATTTTCTGTCATTTATGTAATGCTGGATTCCATGAAAAAAGGCAATTGAAGCCTCATTTAATGAAGGTGCACATGAAAGCGACGTACACTTGTACAAATTGcagtaaaacatttaaatgcaAAGAGAGTTACCGTCGACACATGATTTTTAAACATCCAgtgaaaaatatagataataaaaatttacaaaaatgtgaACTATGTCCTGAATCGTTTTCAGATGAGTTTGAATTATCTAAACACGTAAATACATCTCATGGACgagatgaaaatattatagttaaaaaagaaGATGTCGATATTAAAGAATCATTTCAATGTACAAAATGTTCGGAAACATTTCTAACATGGGATTTACTAAGGTTACACTACGGACAAAACCATCATATAGTCAAAGAAACACAATGCCAAGTCTGCGGTCAAATGATCCCGGATAAcgaattacaaaaacatataaaagaaaaacatacaatattaacAACATTGCAGTGTAAATATTGTGATTTTAAGACAACATCGAGAGGCAGTTTAACGCAGCATATGTTacgacataaaaatattagaacacTTAATTGTGAGATGGAAGGTTGCAGATATAAGACATTTTATGAAGTCGCAATGTTGAAACATAAGAATAGACATAAGGAGCAAGGTGTTAAACTTCAATGTTCGAAGTGTTCTTTTCAaagtatgaataaatatatccTAAAATACCATGAAGAAGCACATATGACTGGTAAAAAGAAATCGTGCGATAAATGTGATTATGCAACAATCTTGCCGGCAAATTTAGTACAACATAAATATAAGCATTCAACggaaaagaaattcaaatgtgAATTTTGTCCGTTCGcaactaaatataatacttcTTTAAGATTTCATGTTAAGAAGAAACATTGTGATCTCCcatcttaa
- Protein Sequence
- MSEVIEDLTVKRQDPTTFLPEEAMSYELKPKRKKKKKKRKQEDPFKDLDEVTDFSTEITLDPEVNIKVENIEVELDFNDFTNDNGLMLEGIHSEDSQEPIVKLEQQNREAVILTFESVISDKSVFNYNQPSETKIIGTTHMCKICHLVFQSTRTLKMHQKRMHKVFRRAFEHVCESCGMSYDRKTSLIAHIRRKHGPNALPIDREERTCDECALVFKGMTRLRLHMQRKHGSFDESFQHACQDCGLTYEKYRSLIVHMQRKHSVNNKPIIEQWFSCPFCPKAFARREAYAKHVQRKHHVDDKKDNNDSILSQNTRNEQTGEISCEECPLVFSSLSYLKLHMRRKHNAFKDNFRLKCRICNLSYDKIESLKRHVRRKHDKGSYCEVCSKQFDTRELYLNHTHIKMIRECSICGLIFASKASLGKHLRSTHKIDLPKTIFCHLCNAGFHEKRQLKPHLMKVHMKATYTCTNCSKTFKCKESYRRHMIFKHPVKNIDNKNLQKCELCPESFSDEFELSKHVNTSHGRDENIIVKKEDVDIKESFQCTKCSETFLTWDLLRLHYGQNHHIVKETQCQVCGQMIPDNELQKHIKEKHTILTTLQCKYCDFKTTSRGSLTQHMLRHKNIRTLNCEMEGCRYKTFYEVAMLKHKNRHKEQGVKLQCSKCSFQSMNKYILKYHEEAHMTGKKKSCDKCDYATILPANLVQHKYKHSTEKKFKCEFCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01139120;
- 90% Identity
- -
- 80% Identity
- -