Phel005366.1
Basic Information
- Insect
- Papilio helenus
- Gene Symbol
- -
- Assembly
- GCA_026546675.1
- Location
- JAOCNA010000020.1:2941257-2945603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 2.9 9.7 5.6 1 23 141 164 141 164 0.96 2 17 2.8e-05 0.0049 18.5 0.4 1 23 173 196 173 196 0.97 3 17 0.013 2.2 10.1 0.8 2 23 209 231 209 231 0.97 4 17 2e-05 0.0035 18.9 0.6 1 23 240 263 240 263 0.97 5 17 0.00017 0.031 15.9 0.3 1 21 275 295 275 296 0.94 6 17 2.7 4.8e+02 2.8 0.6 8 23 313 329 313 329 0.94 7 17 1.2e-05 0.0021 19.6 0.6 2 23 355 377 354 377 0.96 8 17 0.0017 0.29 12.9 2.0 2 23 387 409 386 409 0.96 9 17 0.013 2.2 10.1 0.6 2 20 414 432 413 434 0.92 10 17 0.0058 1 11.2 0.5 2 21 439 458 439 461 0.94 11 17 0.037 6.6 8.6 2.2 3 23 471 492 469 492 0.95 12 17 0.062 11 7.9 5.8 1 23 497 520 497 520 0.94 13 17 2e-05 0.0036 18.9 0.8 2 23 532 554 531 554 0.97 14 17 0.011 1.9 10.3 1.3 1 23 575 598 575 598 0.91 15 17 0.027 4.7 9.1 1.5 2 23 633 654 632 654 0.95 16 17 0.021 3.8 9.4 0.1 1 23 720 742 720 742 0.96 17 17 0.13 24 6.9 2.0 1 23 748 771 748 771 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAATAAATGATGTTGAAGACTTAAAAGTGAAAAGACAAGACCCTACATCTTTTTTACCAGACGAACCAATGTCATATGAATTAAAACCAAAAAGGAAAAAGAAAAAAAAGAAACGAAACCAGGAAGATCCATTTAAAGATTTAGAAGTAACTAATGAACCAACAGAAATAACATTTGATCCTGAGGTTAACATTAAAGTGGAGAATATAGAAGTTGAATTGGATTTTAATGATTTCACCAATGACAATGGACTTATGCTGGAAGGTGTTCAAAGCGAAGATAGTCAGGAACCGGCAGTCAGGTTGGAACAACAGAACCGAGAAGCTGTTATCCTAACATTTGAAAGTGTTATCAGTGATAAATCAGTGTTTAATTACAACCAACCGAGTGAGACAAGTATATTAGGAGAGACACACATGTGTAAAATATGTCACCTAGTGTTTCAATCTATTAGAACATTGAAAATGCATCAAAAAAGAAAACATAAGTTATTCCGGAGGGCATTTGAACATGTATGTGAGAGTTGTGGAATATCTTACGACCAGAAAGGAAGTTTAATCGCACATATAAGACGGAAACATGGCCCTGATTCGTTACCCATTGATCGTGAAGAAAGGACTTGTGATATATGCGCTCTTGTATTTAAAGGTATGACAAGATTACGTATGCATATGCGTAGAAAACACGGCTCTTTTGTAGATTCTTTCCAATATGCGTGTAAAGATTGTGGACTTTCTTATGAAAAGTATAGAAGTTTAATAGTGCATATGAGAAGGAAACATAACGGTGAGAAAAAACCTGTCATAGAACAATGGTATAACTGTCCGTTTTGTCCCAAAGCTTTCACAAAACGTGAAACATACGCAAGACATGTACTAACCGTTTTCAAGCTTTTAAATAATATAAACATCTATAAACGAAAACCGATAAAAGCTTTCACAAAACGAGAAACATACGCAAGACATGTTCAAAGGAAACATCAGATAGTTGAAGACGTAGATCAGAACGACAAAGTTTTATTAGAGAATTCCAAAAACGAAGAAACCGGTGAAATATCTTGTAAAGAATGTCCTTTAGTGTTTTCTTCGTTGAATTATCTTAAATTGCACATGAGAAGGAAGCATAATGCTTTAAAAGATGATTTCAGACTGAAATGTAGATTTTGTAATCTATCTTATGACAAAATAGAGAGTTTGAAACGTCATATTAGAAGGAAACATGACAAAGGATCGTATTGTGAAGTGTGTAATAAACAATTCGATACAAGAGAATTATATTTAAATCACACACATATTAAAATGATTAGAGAATGCTCGGTTTGTGGTTTAATATTCGCTTCTAAAGCGGGCTTGGGTAAACATTTAAGATGTACCCATCAAATTGATTTGCCGAAAACGATTTTCTGTCACATATGTAATGCAGGTTTCCATGACAAAAGGCAATTGAAGCCTCATTTAATGAAAGTTCATTTAAAAGCGTCATACACATGCTTGTATTGCAGTAAAATATTCAAATGCAAAGAAAGTTATCGACGTCACATTTTATTTAAACATCCAGTGAAAAATATTAAAAACAGCCAGTTACAACAGTGCGAGCATTGTCCGGAAACATTTACAGATGAATTTGAATTATCAAAACATGTTAATACAGCCCACGGACAAACAAATATAAATGAAATATTAATAAAAAAAGAAGAAATAGATATCAAAGAATCATTTCAATGCTCGAAGTGTACTGAATCATTCTTAACCTGGGATTTACTTCGGTTACATTTTACACAAAATCATCTCATAGTTAAAGATACGCAATGTCAAGTTTGCGGACAAATAGTCCCAGATAATATACTACAAAAGCACATGAAAGACAAACATACAAAACTAACATCATTACAATGTAAATATTGTGAATTTAAAACATTATCCCGAGGTAGTTTAACACAACATATGTTAAGACACAAAAATGCTACAACGCTAAACTGTGAAATGGAAGGATGTAGATATAAAACATTCTACGAGGTAGCAATGTTAAAACACAAGAAAAAACACACAGAACAAGGTCTTAAATTACAATGTTCTAAATGTTCTTTCCAAAGTATGAATAAATATATTCTAAAGTATCATGAAGAAGCACATATGACCGGTAAAAAGAAATATGCATGTGACCAATGTGATTATGCAACAATTTTACCTGCAAATTTGGTACAACATAAATATAAACATTCAACAGAAAAGAAGTTTAAATGTGAAGTTTGTCCGTTTGCGACTAAATATAATACTTCGTTAAGATTTCATGTTAAAAAGAAACATTGTGATCTCCCATCGTTCAGTTAA
- Protein Sequence
- MSEINDVEDLKVKRQDPTSFLPDEPMSYELKPKRKKKKKKRNQEDPFKDLEVTNEPTEITFDPEVNIKVENIEVELDFNDFTNDNGLMLEGVQSEDSQEPAVRLEQQNREAVILTFESVISDKSVFNYNQPSETSILGETHMCKICHLVFQSIRTLKMHQKRKHKLFRRAFEHVCESCGISYDQKGSLIAHIRRKHGPDSLPIDREERTCDICALVFKGMTRLRMHMRRKHGSFVDSFQYACKDCGLSYEKYRSLIVHMRRKHNGEKKPVIEQWYNCPFCPKAFTKRETYARHVLTVFKLLNNINIYKRKPIKAFTKRETYARHVQRKHQIVEDVDQNDKVLLENSKNEETGEISCKECPLVFSSLNYLKLHMRRKHNALKDDFRLKCRFCNLSYDKIESLKRHIRRKHDKGSYCEVCNKQFDTRELYLNHTHIKMIRECSVCGLIFASKAGLGKHLRCTHQIDLPKTIFCHICNAGFHDKRQLKPHLMKVHLKASYTCLYCSKIFKCKESYRRHILFKHPVKNIKNSQLQQCEHCPETFTDEFELSKHVNTAHGQTNINEILIKKEEIDIKESFQCSKCTESFLTWDLLRLHFTQNHLIVKDTQCQVCGQIVPDNILQKHMKDKHTKLTSLQCKYCEFKTLSRGSLTQHMLRHKNATTLNCEMEGCRYKTFYEVAMLKHKKKHTEQGLKLQCSKCSFQSMNKYILKYHEEAHMTGKKKYACDQCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01139120;
- 90% Identity
- iTF_01145468;
- 80% Identity
- -