Pmem004551.1
Basic Information
- Insect
- Papilio memnon
- Gene Symbol
- -
- Assembly
- GCA_003118335.3
- Location
- JAOPJP010000020.1:3276167-3279409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.017 1.5 9.8 5.6 1 23 142 165 142 165 0.96 2 16 0.00019 0.016 16.0 0.3 1 23 174 197 174 197 0.97 3 16 0.013 1.1 10.2 0.8 2 23 210 232 210 232 0.97 4 16 2e-05 0.0018 19.0 0.6 1 23 241 264 241 264 0.97 5 16 0.00012 0.01 16.6 2.7 1 23 276 299 276 300 0.96 6 16 1.2e-05 0.0011 19.7 0.6 2 23 325 347 324 347 0.96 7 16 0.0017 0.15 12.9 2.0 2 23 357 379 356 379 0.96 8 16 0.013 1.1 10.2 0.6 2 20 384 402 383 404 0.92 9 16 0.006 0.52 11.2 0.5 2 21 409 428 409 431 0.94 10 16 0.038 3.3 8.7 2.3 3 23 441 462 439 462 0.95 11 16 0.41 35 5.5 5.3 1 23 467 490 467 490 0.93 12 16 0.055 4.7 8.2 1.2 3 23 503 524 501 524 0.96 13 16 0.012 1.1 10.2 0.9 1 23 545 568 545 568 0.91 14 16 0.028 2.4 9.1 1.5 2 23 603 624 602 624 0.95 15 16 0.014 1.2 10.0 0.1 1 23 690 712 690 712 0.96 16 16 0.22 19 6.3 1.9 1 23 718 741 718 741 0.96
Sequence Information
- Coding Sequence
- ATGTCTGAAATAAATAATGTTGAAGACTTAAAAGTGAAAAGACAAGACCCTACATCTTTTTTACCCGACGAGCCAATGTCATATGAGTTAAAACCAAAAAGAAAAAAGAAAAAAAAGAAACGAAACCAGGAAGATCCATTTAAAGATTTAGGGGAAGTAAATAATGAACCAATAGAAATAACATTTGATCCTGAGGTTAATATTAAAGTGGAGAATATAGAAGTTGAATTAGATTTCAATGATTTCACCAATGACAATGGACTCATGGTGGAAGGTGTTCAAAGCGAAGATAGTCAGGAACCAGCAGTCAGATTGGAACAACAGAACCGAGAAGCTGTTATCCTAACATTCGAAAGTGTTGTCAGTGACAAATCAGTGTTTAGTTACAACCAACCAAGTGAGACAAAGATTTTAGGACAGACACACATGTGTAAAATATGTCATCTAGTGTTTCAATCTATTAGAACATTGAAAATGCATCAAAAGAGAAAACATAAGTTATTCCGGAGAGCATTTGAACATGTATGTGAGAGTTGTGGAATGGCTTACGACCAGAAAGGAAGTTTAATCGCACATGTAAGACGGAAACATGGCCCAGATTCGTTACCAGTTGACCGAGAAGAAAGAACTTGTGACATATGCGCGCTTGTATTTAAAGGTATGACAAGGTTACGTATGCATATGCGTAGAAAACACGGCTCTTTTGAAGATTCTTTCCAATATGCGTGTAAAGATTGTGGACTTTCTTATGAAAAGTATAGAAGTTTAATCGTCCATATGCGGAGGAAACATAATGTGGAGAAGAAACCCGTGATAGAACAGTGGTATAATTGTCCGTTTTGTCCAAAAGCATTCACTAAACGGGAAACGTATGCAAGACATGTGCAAAGGAAACACCACATAGTTGAAGATGTAGATAAAAACGATAAAGATTTATTGGAGAATTCAAAAAATGAAGAAACCGGTGAAATATCTTGTAAAGAGTGTCCGCTAGTGTTTTCTTCATTAAATTACCTTAAATTACACATGAGAAGGAAGCATAATGCTTTAAAAGATGATTTCAGATTAAAATGTAGATTTTGTAATCTATCTTATGACAAAATAGAGAGTTTAAAACGTCATATTAGAAGAAAACATGACAAAGGATCGTATTGTGAAGTGTGCAATAAACAATTCGATACAAGAGAGTTATATTTAAATCACACACATATTAAAATGATCAGAGAATGCTCGGTTTGCGGTTTAATATTCGCGTCTAAAGCTGGCTTGGGTAAACATTTACGATGTACCCACCAAATCGATTTGCCGAAAACAATTTTCTGTCACATATGTAATGTAGGATTCCATGACAAAAGGCAATTGAAGCCTCATTTAATGAAAGTGCATTTAAAAGCATCATACACATGTATATATTGTACAAAAGTATTCAAATGCAAAGAAAGCTATAGACGTCACATTTTATTTAAACATCCAGTTAAAAATATTAAAAACAGCCAGTTACAACACTGCGAACATTGTCCGGAAACATTTCTAGATGAACTTGAATTATCTAAACATGTTAACACAGCACACGGACAAACAAATATAAACGATATATTAATAAAAAAAGAAGATATCGACATAAAAGAATCATTTCAATGCTCCAAATGTACTGAATCATTCTTAACTTGGGAATTACTTAGGTTACATTTCACACAAATTCATCTCATAGTTAAAGATACACAGTGTCAAGTTTGCGGTCAAATGGTCCCGGATAATATACTACAAAAACACATGAAAGACAAACATACAACGCTAACAACATTGCAATGTAAATATTGTGAATTTAAAACATTATCCCGAGGGAGTTTGACACAACATATGTTGAGACACAAAAATGCTACAACATTAAACTGTGAAATGGAAGGCTGTAGATATAAAACATTCTATGAAGTAGCGATGTTAAAACACAAGAAGAAACACACGGAACAAGGTCTTAAATTACAATGTTCTAAGTGCTCGTTCCAAAGTATGAACAAATACATTTTAAAGTACCATGAGGAAGCACATATGACCGGTAAAAAGAAATATGCTTGTGACAAATGTGATTATGCAACAATTCTACCTGCAAATTTAGTACAACATAAATATAAACATTCAACAGAGAAGAAGTTTAAATGTGAAGTTTGTCCGTTTGCGTCGAAATATAATACTTCGTTAAGATTTCATGTTAAAAAGAAACATTGTGATCTCCCATCGTTCAGTTAA
- Protein Sequence
- MSEINNVEDLKVKRQDPTSFLPDEPMSYELKPKRKKKKKKRNQEDPFKDLGEVNNEPIEITFDPEVNIKVENIEVELDFNDFTNDNGLMVEGVQSEDSQEPAVRLEQQNREAVILTFESVVSDKSVFSYNQPSETKILGQTHMCKICHLVFQSIRTLKMHQKRKHKLFRRAFEHVCESCGMAYDQKGSLIAHVRRKHGPDSLPVDREERTCDICALVFKGMTRLRMHMRRKHGSFEDSFQYACKDCGLSYEKYRSLIVHMRRKHNVEKKPVIEQWYNCPFCPKAFTKRETYARHVQRKHHIVEDVDKNDKDLLENSKNEETGEISCKECPLVFSSLNYLKLHMRRKHNALKDDFRLKCRFCNLSYDKIESLKRHIRRKHDKGSYCEVCNKQFDTRELYLNHTHIKMIRECSVCGLIFASKAGLGKHLRCTHQIDLPKTIFCHICNVGFHDKRQLKPHLMKVHLKASYTCIYCTKVFKCKESYRRHILFKHPVKNIKNSQLQHCEHCPETFLDELELSKHVNTAHGQTNINDILIKKEDIDIKESFQCSKCTESFLTWELLRLHFTQIHLIVKDTQCQVCGQMVPDNILQKHMKDKHTTLTTLQCKYCEFKTLSRGSLTQHMLRHKNATTLNCEMEGCRYKTFYEVAMLKHKKKHTEQGLKLQCSKCSFQSMNKYILKYHEEAHMTGKKKYACDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFASKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01139120;
- 90% Identity
- iTF_01147586; iTF_01144015;
- 80% Identity
- -