Pmac004058.1
Basic Information
- Insect
- Papilio machaon
- Gene Symbol
- -
- Assembly
- GCA_001298355.1
- Location
- NW:29580-32692[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.037 2 8.7 6.2 1 23 142 165 142 165 0.96 2 17 1.8e-05 0.00094 19.1 0.5 1 23 174 197 174 197 0.97 3 17 0.013 0.67 10.2 0.8 2 23 210 232 210 232 0.97 4 17 9.4e-05 0.005 16.9 1.8 1 23 241 264 241 264 0.96 5 17 3.6e-05 0.0019 18.2 0.9 1 23 276 299 276 299 0.97 6 17 1.3e-05 0.00069 19.6 0.6 2 23 325 347 324 347 0.96 7 17 0.0015 0.082 13.0 2.1 2 23 357 379 356 379 0.96 8 17 0.013 0.67 10.2 0.6 2 20 384 402 383 404 0.92 9 17 0.0032 0.17 12.0 0.5 2 21 409 428 409 431 0.94 10 17 0.022 1.2 9.4 3.1 3 23 441 462 439 462 0.95 11 17 3.3 1.8e+02 2.5 7.0 1 23 467 490 467 490 0.92 12 17 0.0015 0.08 13.1 0.2 2 23 502 524 501 524 0.96 13 17 0.00015 0.0079 16.2 1.8 1 23 546 569 546 570 0.94 14 17 0.18 9.8 6.5 0.2 2 23 576 597 575 597 0.90 15 17 0.00026 0.014 15.4 2.1 2 23 604 625 603 625 0.97 16 17 0.014 0.73 10.0 0.1 1 23 691 713 691 713 0.96 17 17 0.13 7.2 6.9 2.0 1 23 719 742 719 742 0.96
Sequence Information
- Coding Sequence
- atgtctGAACTAAATGATGTCGAAGACTTAACAGGGAAAAGACAAGACCCTACTTCTTTTTTGCCGGAGGAGGCAATGTCATATGAGTTGAaaccaaaaaagaaaaagaaaaaaaagaaacataatcaGGAAGATCCATTCAAAGATTTAGAAGAAGTAACTAATCTACCAACAGAAATAACCCTTGATCCTGaggttaatattaaagttgagAATATTGAAGTTGAGTTGGATTTTAACGATTTTACCAATGATAATGGACTTATGCTTGAAGGTATTCAAAGTGAAGATAGTCAGGAACCAGTAGTAAAATTGGAGCAACAGAACAGAGAAGCGGTAATTCTAACATTTGAAAGTGTAGTCAGTGATAAATCagtgtttaattataatcaacCAAGTGAAACGAAGATCTTAGGACCGACACatatgtgtaaaatatgtcatttaaTGTTTCAATCAATTCGTACATTAAAAATGCACCAAAAGAGAAAGCACAAAGTATTCAGACGGTTATTTGAACATGTCTGCGATAGTTGTGGAATGGCTTATGACCAGAAAAGCAGTCTAATTGCACATATAAGAAGAAAACACGGCCCAAATTCATTACCTGATGATAGAGAGGAAAGAACTTGTGATATATGTGCACTTGTCTTTAAAGGTATGACAAGGTTACGTATGCATATGCGAAGGAAGCATGGATCTTTCAAAGATTCATTCCAACATGCATGTAAAGATTGTGGACTTACATATGACAAATATAGGAGTTTAATTGTACATATGCGGAGGAAACATAATGTTGATAATCAACCTGTACCAGAGCAATGGTATAACTGTCCATTTTGTCCTAAAGCCTTTACTAAACGTGAGACATATGCAAGACATGTGCAAAGAAACCATAACGAAGATGAAGACATGGATAATgacgataaaattttattaaaaaatgccaCAAATGAAAAAACTGGTGAAGTCTCTTGTAAAGAGTGCCCTCTAGTGTTTTCTTCGTTAAACTACCTTAAATTACATATGAGAAGGAAACATAATGCTTTGAAAGATAATTTCAGActcaaatgtaaattttgtaatttatcatACGATAAAATAGAGAGCTTAAAGCGTCATGTTCGAAGGAAACACGATAAAGGATCGTATTGTGAAGtgtgtaataaacaatttgataCTAGAGAGTTGTATTTGAATCATACTCATGTAAAAATGATAAGGGAATGCTCAATTTGTGGCTTAATATTCGCATCTAAAGCTGGTTTGGGTAAACATTTACGATGTACCCACAAAATTGATTCGCCTAAAACAATATTCTGTCACATATGTAACACTGGATTCCATGATAAAAGGCAATTGAAGCCACATTTAATGAAAGTGCATTTAAAAGTATCGTACACTTGTATACAttgcagtaaaatatttaaatgcaaagAGAGTTATAGacgacatattttatttaaacatccaattaaaaatatcaatcatagtcaattacaaaaatgtgAGCGTTGTACAGAATCTTTCACAGATGAATTAGAATTGTCCAAACATGTTAATATAGCACATGGACAAGAACCAAACATAAATGAAATCGTTGTTAAAAAAGAGgaaattgatattaaagaaACATTTCAATGCTCAAAATGTACGGAAACATTTATAACTTGGGAACTACTTAAGTTACATTACGCACAAAATCATCATATAATCAAAGATACACAGTGTCAAGTTTGCGGTCAAATATTACCAGATAATGAACTACAAAAGCATATGAAAATCAAACATacagaaataataacattacaatgtaaatattgtgaatttaaaactaaatcacGTGGTAGTTTAACACAACATATGTTAAGACATAAAAATGCTACCACGTTAAATTGTGAAATGGAAGGTTgcagatataaaacattctACGAAGTTGCTATGTTGAAACACAAACAGAAACATACAGAACAAGGtgttaaattacaatgttCCAAATGTTCATTTCAAAcgatgaataaatatatattaaaatatcatgaAGAAGCACATTTAACgggtaaaaagaaatatgcaTGTGATAAATGTGATTATGCAACTATATTACCAGCAAATTTGGTTCAACACAAATATAAGCATTCAACAGAGAAGAAGTTTAAATGTGAGGTTTGCCCGTTTGcaactaaatataatacttcGTTACGATTTcatgttaaaaagaaacattgtgATCTCCCATCTTTcagttaa
- Protein Sequence
- MSELNDVEDLTGKRQDPTSFLPEEAMSYELKPKKKKKKKKHNQEDPFKDLEEVTNLPTEITLDPEVNIKVENIEVELDFNDFTNDNGLMLEGIQSEDSQEPVVKLEQQNREAVILTFESVVSDKSVFNYNQPSETKILGPTHMCKICHLMFQSIRTLKMHQKRKHKVFRRLFEHVCDSCGMAYDQKSSLIAHIRRKHGPNSLPDDREERTCDICALVFKGMTRLRMHMRRKHGSFKDSFQHACKDCGLTYDKYRSLIVHMRRKHNVDNQPVPEQWYNCPFCPKAFTKRETYARHVQRNHNEDEDMDNDDKILLKNATNEKTGEVSCKECPLVFSSLNYLKLHMRRKHNALKDNFRLKCKFCNLSYDKIESLKRHVRRKHDKGSYCEVCNKQFDTRELYLNHTHVKMIRECSICGLIFASKAGLGKHLRCTHKIDSPKTIFCHICNTGFHDKRQLKPHLMKVHLKVSYTCIHCSKIFKCKESYRRHILFKHPIKNINHSQLQKCERCTESFTDELELSKHVNIAHGQEPNINEIVVKKEEIDIKETFQCSKCTETFITWELLKLHYAQNHHIIKDTQCQVCGQILPDNELQKHMKIKHTEIITLQCKYCEFKTKSRGSLTQHMLRHKNATTLNCEMEGCRYKTFYEVAMLKHKQKHTEQGVKLQCSKCSFQTMNKYILKYHEEAHLTGKKKYACDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01139120;
- 90% Identity
- iTF_01149791;
- 80% Identity
- -