Pgig011293.1
Basic Information
- Insect
- Papilio gigon
- Gene Symbol
- -
- Assembly
- GCA_027563995.1
- Location
- JAODUI010000020.1:3179971-3182565[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.015 1.1 10.0 5.8 1 23 141 164 141 164 0.96 2 18 8.8e-06 0.00063 20.2 0.5 1 23 173 196 173 196 0.96 3 18 0.015 1.1 10.0 0.7 2 23 209 231 208 231 0.97 4 18 0.00028 0.02 15.5 1.5 1 23 240 263 240 263 0.96 5 18 0.00012 0.0088 16.6 2.7 1 23 275 298 275 299 0.96 6 18 1.4e-05 0.001 19.6 0.6 2 23 324 346 323 346 0.96 7 18 0.00032 0.023 15.3 1.3 2 23 356 378 355 378 0.96 8 18 0.014 0.98 10.2 0.6 2 20 383 401 382 403 0.92 9 18 0.0035 0.25 12.0 0.5 2 21 408 427 408 430 0.94 10 18 0.04 2.9 8.7 2.2 3 23 440 461 438 461 0.95 11 18 3.6 2.6e+02 2.5 7.0 1 23 466 489 466 489 0.92 12 18 0.00013 0.0093 16.5 0.7 2 23 501 523 500 523 0.96 13 18 0.0052 0.37 11.5 0.4 1 23 547 570 547 570 0.90 14 18 1.1 79 4.2 0.2 2 23 577 598 576 598 0.86 15 18 0.00077 0.055 14.1 1.7 2 23 605 626 604 626 0.97 16 18 8.2 5.9e+02 1.4 0.8 5 23 638 656 633 656 0.84 17 18 0.015 1.1 10.0 0.1 1 23 692 714 692 714 0.96 18 18 0.15 10 6.9 2.0 1 23 720 743 720 743 0.96
Sequence Information
- Coding Sequence
- ATGTCTCAATTTAATAACGCAGACATATATGGGAAAAGACAAGACCCTACGTCTTTTTTGCCCGAAGAGCCTATGTCGTATGAATTGAAACCAAAAAAGAAAAAGAAAAAAAAGAAACATCACCAGGAAGATCCATTTAAAGATTTAGGGGAAGTACCACACTTACCAACGGAAATAACCCTCGATCCTGAGGTTAATATTAAAGTTGAAAATATTGAAGTTGAGTTGGATTTTAATGATTTCACTAATGATAATGGACTGATGCTGGAAGGTGCTCAGAGTGAGGATAGTCAGGAACCAGTTGTCAAATTGGAGCAACAGAACCGTGAAGCTGTTATATTGACATTCGAAAGTGTTGTCAGTGATAAATCAGTGTTTAATTATAACAGGCAGAGCGAGACAAAAATATTAGAAACAACGCACATGTGTAAAATATGTCATCTAGTTTTTCAATCTATTAAAACATTGAAAATGCACCAAAAGAGGAAACACAAAGTGTTCAGACGGTCATTTGAACATATATGTGAGAACTGCGGGATGGCGTACGAACAGAAAAGTAGTCTAATCGCTCATATAAGAAGGAAACATGGACCGGATACGTTACCTGATGATGGAGAAGAGAAAACATGTGATATATGCGCACTGGTCTTTAAAGGTATAACACGGTTACGTATGCATATGCGTAGGAAGCATGGATCTTTTGAAGATTCATTCCGACATGCATGCAAAGATTGTGGACTTACGTATGACAAATATAGGAGTTTAATTGTACATATGCAACGAAAGCACAATGAGGATAAGAAGCCGGTATTAGAACAATGGTACAACTGTCCGTTCTGTCCTAAAGCTTTCACTAAACGTGAAACTTACGCGAGGCATGTCCAAAGAAAACATCATGTTGATAAAGAAATGCATAATAAAGATCAGGTTTTATTAGCCAATTCCACAAATGAACAAACCGGGGAAGTGTCGTGTAAAGAGTGCCCTCTAGTGTTTTCCTCGTTAAACTACCTTAAATTACATATGAGGAGGAAGCATAACGCTTTAAAAGACAACTTCAGACTTAAATGTAGAATTTGTAATTTATCATATGATAAGATTGAAAGCTTGAAGCGACATATCCGTAGGAAGCACGACAAGGGGTCGTATTGTGAAGTGTGCAACAAACAATTCGATACCAGGGAGTTATATTTGAATCATACTCATATTAAAATGATTAGGGAATGCTCAATATGTGGTTTGATATTCGCCTCAAAGGCCGGTTTGGGTAAACATTTGCGTTGTACGCACAAAATCGATTCGCCGAAGACAATATTTTGTCACATATGCAACGCCGGGTTCCACGACAAACGTCAGCTGAAGCCTCATTTAATGAAAGTGCATTTAAAAGTGTCATACACATGTATACATTGCAGTAAAATATTTAAATGTAAAGAAAGTTATCGACGTCATATATTATTTAAACATCCAGTGAAAACCATAAGCCACAATCAGTTGCAGACGTGCGACCAGTGTCCGGAAACTTTCACCGATGAGTTTGAACTATGCAAACATGTTAATATAGCTCACAGACAAAAAATAGAAACAAACATTAACAATGTTGTTGTGAAAAAGGAAGATGTTGACATAAAAGACTCGTTTCAATGCTCCAAGTGCCCCGAATCGTTCCTAACTTGGGAATTACTTAGGTTACATTTTGCACAGAACCATCACATAGTTAAAGACACACAGTGCCAAGTCTGCGGTCAAATAGTTCCCGATAATGAACTACAGAAGCATGTCAAAAGCAAACATACACAATTAACAAACTTACAATGTAAATATTGTGAATTTAAAACGACATCCCGTGGTAGTCTCACACAGCATTTGTTAAGGCACAAAAATGCTACAACGATAAATTGTGTTTTCGAAGGTTGCAGGTATAAGACGTTCTACGAAGATGCAATGTTGAAACACAAACGGAAACATACGGAACAAGGACTCAAGTTGCAATGTTCCAAATGTTCATTTCAAAGTATGAATAAATACATCTTGAAGTACCACGAAGAAGCTCATATGACGGGGAAAAAGAAATACGCGTGCGATAAATGCGACTATGCGACTATCTTGCCGGCTAACTTGGTTCAACACAAATACAAGCATTCAACAGAAAAGAAGTTCAAATGTGAAGTGTGTCCGTTCGCAACCAAGTACAACACGTCGTTAAGGTTTCACGTCAAGAAGAAGCATTGTGATCTCCCGTCGTTTGATTAA
- Protein Sequence
- MSQFNNADIYGKRQDPTSFLPEEPMSYELKPKKKKKKKKHHQEDPFKDLGEVPHLPTEITLDPEVNIKVENIEVELDFNDFTNDNGLMLEGAQSEDSQEPVVKLEQQNREAVILTFESVVSDKSVFNYNRQSETKILETTHMCKICHLVFQSIKTLKMHQKRKHKVFRRSFEHICENCGMAYEQKSSLIAHIRRKHGPDTLPDDGEEKTCDICALVFKGITRLRMHMRRKHGSFEDSFRHACKDCGLTYDKYRSLIVHMQRKHNEDKKPVLEQWYNCPFCPKAFTKRETYARHVQRKHHVDKEMHNKDQVLLANSTNEQTGEVSCKECPLVFSSLNYLKLHMRRKHNALKDNFRLKCRICNLSYDKIESLKRHIRRKHDKGSYCEVCNKQFDTRELYLNHTHIKMIRECSICGLIFASKAGLGKHLRCTHKIDSPKTIFCHICNAGFHDKRQLKPHLMKVHLKVSYTCIHCSKIFKCKESYRRHILFKHPVKTISHNQLQTCDQCPETFTDEFELCKHVNIAHRQKIETNINNVVVKKEDVDIKDSFQCSKCPESFLTWELLRLHFAQNHHIVKDTQCQVCGQIVPDNELQKHVKSKHTQLTNLQCKYCEFKTTSRGSLTQHLLRHKNATTINCVFEGCRYKTFYEDAMLKHKRKHTEQGLKLQCSKCSFQSMNKYILKYHEEAHMTGKKKYACDKCDYATILPANLVQHKYKHSTEKKFKCEVCPFATKYNTSLRFHVKKKHCDLPSFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01139120;
- 90% Identity
- -
- 80% Identity
- -