Olig002441.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Osmia lignaria
Gene Symbol
PAXBP1
Assembly
GCA_012274295.1
Location
NW:2020677-2026236[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.2e-29 3.1e-25 88.5 1.1 3 272 546 754 544 756 0.93

Sequence Information

Coding Sequence
ATGTTAAGGACAATgtcattatttaataaaccgAAGAGAAATATCCGCCGTCGACCGTTCAACGACGATGAcgaagataatgaaaataggATGGAAGTGGAAGATACTCAGCCTGTTAAATCTAAAActaagaagaaggaaaaaccGAAGCAGACGCTCCTTAGTTTTGGAGAGGAGCTGGAAGAAGCGGATGATGGGGAAGTCTTTAAAGTGAAGAAATCTTCTAGGAgcaaaaaattgatgaaacaaCTAGATcacgaaaggaaaaaaaagaaaggtgaaGAGAAAATGCAAGTGGACTCTGAGCAAGCGAACATGTCCATTAAACAGGAAAAAGATTTAGAAATAAAGACTGATGATCTAGTAgttaaaatcaaaaataccGGATCTTTGATCTTGAATGGACGAGCTGCACTAGCAGCTGGAAAGGATGACTATACATCTGATGAAGAAGATGATGAACCGCGTGGTCataaatttagaagaaatacAGATAAGGCTGATACAATGAAGATTCTTCTTGAAAGTGGTTGTATACCTGATGCTGCAATGATCCATGCAGCTAGGAAATGCAGACAAAAGGCAAGAGAATTAGGAACTGAATATATTCCTATAGAAGAGCAGAGCGACGATAAGGGTAAATCAAGACTGATTAGAGAAGAAGATCACGATAGAAGCGATGACGACGATTCTCAAGATCGAATCGACATGACTGTTAATACCGAAGCGcgtgataaagaaaaaagaagagaagcaTTTCTTGCTTCACAAGTTCCATTAAAACtTTCTGATGATGAGAGTGAACATGAGAATGAGGAAGAAGAATGGGAAGCTCAACAAATTAGGAAAGGTGTGACAGGAGCACAGATTGCAGCAGTACAACAAGATTCTATGATGCAACAACAATATTCAATGGGTATGAATGTGAATCAGATGATGGGAAGTGGAATATCGTTAGAAATGGTCATGATGCCAGCACCACCGCCCCCTCCAACGATTCAGCCACCAGATCCAACAAAAATAGTGCCAATTACTCCTCAGGaagttgtaaataaaatacgtGCAAGATTGGATAGTTCGAAAGAAGTACATCGACGTCATCAACTAGATCAGGATCGGTTAGAACAAGAATTAGGTCAAACAATGAAAGAACTGGATGTTGCCGAACTTCGTGCACCGCAGCTTGCACACCGCTTCAGATATTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTGCCGCTGGTCGTTGGATTGGAGCAACGCTGGTTAGATCTTTATAGTGAACGTGCCACTGAATTAATGGAAAGAAGACGACAAGATACGAGGGATCAAGCGGAAGAAATTACAACAGCTGCAAGAGGACAACCTATTCGAAAAGGACCGGAAGTCGAAGCTCGCATTCGTCGAGCTacagaaagagaaggaagaagagctCGTCGAAGAAGGGCTAGAGAATTAGCTCCTACAATGCCAAAACATATCGATGGAATGTCAAGTGATGATGAAGTTACTGAACAGCAAAATCTTGcttttaaacaaacaaaagACGAAATCGATAatgaaagtaaagaaatatttgccGATGTGATGGACGAATATTGCACAATAAGGGGGATACTTTCAAAATTAGAATCATGGAGAGAAACTGATAGAGATGCTTATATGGAAGCTTATGTATCTTTATGTATAcctaaaattatttctcctATTATTAGACTGCACTTGCTGACATGGAATCCTATTatgGAAAGTGCTGATATAGAAAGAACGAAATGGTATAATACATTGCTTTTATATGCATTagataataatgaaacagAAGAATCCCTTAAGAAAGATCCAGATGTTAGATTAGTACCATTCACAGTGGAGAAAGTCGTTATACCTAGATTAACATctATAGTTGAAAGAATATGGGATCCAATGTCCACATCGCAAACATTACGTCTTGTTGGCACAGTAAATCGCCTGATTAGAGACTATCCGAATTTAAATGATGCGAGCAAACCAttagaaacattatttaatgctatattagataaaattaagtCGGCAGTTGAAAATGATGTATTTATACCAATTTTCCCGAAACAAGTTTTGGATACAAaacatcaattttttcaaagacaGTTTGCAATGGCTGTGAAGCttctaagaaatttattaagttGGCAAGGTCTTCTTGGAGAtacacaattaaaaaatttagcCCTTGGTTCATTATTAAACCGATATCTTTTAGCGGGTCTCAGAGTATCTGCTCCTACCGATGCTTTATTTAAAGCAAATATGGTAATGAGTACACTTCCACGAGCATGGTTACAAGGTGAAACAATAGATCATTTGAGAATGTTTGCTACACTTATTCAACAACTTAGCGAACAATTAGATCAAGCAAATCCGGCACATAACGAAGCCTGGGAATATTCAAAGTCcatcttaaaaataattaaacctttgtaa
Protein Sequence
MLRTMSLFNKPKRNIRRRPFNDDDEDNENRMEVEDTQPVKSKTKKKEKPKQTLLSFGEELEEADDGEVFKVKKSSRSKKLMKQLDHERKKKKGEEKMQVDSEQANMSIKQEKDLEIKTDDLVVKIKNTGSLILNGRAALAAGKDDYTSDEEDDEPRGHKFRRNTDKADTMKILLESGCIPDAAMIHAARKCRQKARELGTEYIPIEEQSDDKGKSRLIREEDHDRSDDDDSQDRIDMTVNTEARDKEKRREAFLASQVPLKLSDDESEHENEEEEWEAQQIRKGVTGAQIAAVQQDSMMQQQYSMGMNVNQMMGSGISLEMVMMPAPPPPPTIQPPDPTKIVPITPQEVVNKIRARLDSSKEVHRRHQLDQDRLEQELGQTMKELDVAELRAPQLAHRFRYYQELRGYVTDLVECLDEKLPLVVGLEQRWLDLYSERATELMERRRQDTRDQAEEITTAARGQPIRKGPEVEARIRRATEREGRRARRRRARELAPTMPKHIDGMSSDDEVTEQQNLAFKQTKDEIDNESKEIFADVMDEYCTIRGILSKLESWRETDRDAYMEAYVSLCIPKIISPIIRLHLLTWNPIMESADIERTKWYNTLLLYALDNNETEESLKKDPDVRLVPFTVEKVVIPRLTSIVERIWDPMSTSQTLRLVGTVNRLIRDYPNLNDASKPLETLFNAILDKIKSAVENDVFIPIFPKQVLDTKHQFFQRQFAMAVKLLRNLLSWQGLLGDTQLKNLALGSLLNRYLLAGLRVSAPTDALFKANMVMSTLPRAWLQGETIDHLRMFATLIQQLSEQLDQANPAHNEAWEYSKSILKIIKPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01122430; iTF_00050945; iTF_00828775; iTF_00459752; iTF_01299176; iTF_01102793; iTF_01100588; iTF_00439469; iTF_00798573; iTF_00629102; iTF_01379214; iTF_00266452; iTF_00829497; iTF_00265691; iTF_01508859; iTF_01103549; iTF_00262656; iTF_01129344; iTF_01364642; iTF_00721256; iTF_00905419; iTF_01056812; iTF_00058702; iTF_00841072; iTF_00057943; iTF_00059453; iTF_01057642; iTF_01055985; iTF_00398078; iTF_00397288; iTF_01232994; iTF_01269796; iTF_01267560; iTF_01271209; iTF_01266880; iTF_01268267; iTF_01234341; iTF_01232397; iTF_01235023; iTF_01497415; iTF_00652714; iTF_01207356; iTF_01120202; iTF_00866699; iTF_00863950; iTF_00866005; iTF_00861872; iTF_01354607; iTF_01015809; iTF_01355304; iTF_01520223; iTF_00898737; iTF_00016033; iTF_00730053; iTF_01254791; iTF_00109825; iTF_00264268; iTF_01077461; iTF_00264991; iTF_00730731; iTF_00730732; iTF_01228368; iTF_00417554; iTF_01476914; iTF_00181299; iTF_00729299; iTF_00182617; iTF_00181958; iTF_01422925; iTF_00756637; iTF_01270496; iTF_01512182; iTF_00391288; iTF_00633625; iTF_00738347; iTF_00393597; iTF_01303353; iTF_00060206; iTF_01411505; iTF_01414172; iTF_01412320; iTF_00175746; iTF_00175025; iTF_00174174; iTF_01200147; iTF_00864634; iTF_01048222; iTF_01514821; iTF_01048903; iTF_01514153; iTF_01512826; iTF_01513471; iTF_00718560; iTF_00719411; iTF_00733952; iTF_00141223; iTF_00385313; iTF_01420929; iTF_00125922; iTF_00684162; iTF_00360899; iTF_00860387; iTF_00863267; iTF_00128196; iTF_00865316; iTF_00873796; iTF_00963844; iTF_00219109; iTF_00224549; iTF_00229350; iTF_00024615; iTF_00216391; iTF_00227271; iTF_00183944; iTF_01476168; iTF_00221257; iTF_00296777; iTF_00215018; iTF_00230026; iTF_00233226; iTF_00765578; iTF_00231979; iTF_00292267; iTF_00294475; iTF_01071019; iTF_01418347; iTF_00128972; iTF_00129740; iTF_00217069; iTF_00295245; iTF_01066253; iTF_00773806; iTF_01169166; iTF_01407278; iTF_01099183; iTF_00225232; iTF_00885104; iTF_00217745; iTF_00760977; iTF_00861137; iTF_01420273; iTF_00183282; iTF_00254322; iTF_00360210; iTF_00676018; iTF_00769618; iTF_00983602; iTF_01408210; iTF_01418994; iTF_00219795; iTF_00221907; iTF_00231315; iTF_00625491; iTF_00088820; iTF_00762548; iTF_01422228; iTF_00087157; iTF_00214389; iTF_00126710; iTF_01409110; iTF_01419638; iTF_00215704; iTF_00225912; iTF_00306264; iTF_01229016; iTF_01255544; iTF_01473176; iTF_01477560; iTF_00232601; iTF_00763225; iTF_01523354; iTF_01130811; iTF_00227964; iTF_00253564; iTF_00961820; iTF_01087196; iTF_01405692; iTF_00127453; iTF_00142461; iTF_00452573; iTF_00141822; iTF_00230687; iTF_01065567; iTF_00220576; iTF_00226592; iTF_00862560;
90% Identity
iTF_00861872;
80% Identity
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