Ccot010861.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
PAXBP1
Assembly
GCA_001594065.1
Location
NW:27804-35419[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-31 3e-27 95.3 3.3 2 272 540 749 539 751 0.93

Sequence Information

Coding Sequence
ATGTCGTTATTCAACAAGCCGAAGCGGAACATACGCCGACGTCCGTTCGACGATGAAGACGAGGATAATGAAAACAGAATGGAGGTGGAGGACGCGCAGCCGATCAAAGTTAAAACGAAGAAAGAGAAACCAAAGCAGACGCGCCTCAGTTTTGGAGAGGAGCTGGAACAAGgGGACGACGGAGAAGTTTTTATAGTCAAGAAATCGTCCAGGAGCAAAAAGCTGATGAAACAGCTAGATCAcgaaaggagaaaaaagaaaggtgAAGAGAAAATGCAAGTGGACACTGAGCAAGCAAATAAATCCATTAAGCAGGAAAAAGATTTAGAAATAAAGACAGATGATCTAGTAgttaaaataaaaaacacagGACCTCTGATTTTAAACGGACGAGCTGCATTGGCAGCAGGAAAAGATGACTATACATCGGGTGAGGAGGAAGATGAACCTTGCAGTcacaaatttcgaaaaaatacaGATAAAGCTGAAACTGTAAAAATACTTCTTGAGAGTGGATGTATACCTGATGCAGCTATGATTCATGCAGCAAGAAAACGCAGACAAAAAGCAAGAGAATTAGGAACCGATTACATTCCTATTGAAGAGCAAAGTGATGACAAGGGCAAATCAAGACTAATACGAGAGGAAGATCATGATCGAAGTGACGATGATGATTCTCAAGATCGATTAGATATGACTGTCAACACTGAAGCACGTGATAAAGAAAAGAGGAGAGAAGCATTTCTTGCTTCTCAAGTTCcattaaaattttcagATAATGAAAGTGAGCACGaaaacgaagaagaagaatggGAAGCTCAACAAATACGAAAAGGTGTAACTGGCGCTCAgATTGCAGCAGCACAGCAAGATTCTATGTTACAACAACAATATACAATGGGGATGAATGTTAATCAGATGATTGGGTCTAGTGTACCTTTAGAAATGGTATTAATGCCTGCACCACCACCGCCACCGTCTATTCAACCACCAGATCCAACAAAAATTGTACCTATTACTCCGCAAGAAGTTGTCAACAGGATGCGCACAAGGTTGGACAATTTGAAAGAGGTACATAGACGGCATCAGCAAGATCAGGAGCGTTTAGAGGGAGAATTACAGCAAATCGTGAAAGAATTGGACGAAAGTGAAGTTCGTACTCCACAATATGCACAACGCTTCAGATATTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTTCCCCTGGTCATTGACTTGGAGCAACGCTGGTTAGATTTGTATAGTGAACGTTCAGTAGAATTGATGGAACGAAGACGGCAAGACACGAGAGATCAGGCGGAAGAAATAACTACTACAGCAAGAGGTCAAACCATGAGAAGAGGACCGGAAGTAGAAATACACGTACGACGAGCTACAGAGAGAGAAGGTAGAAGAGCCCGTCGTAGAAGAGCAAGAGAATTAGCTTCAAATATTCTAAAGCATATTGATGGCATGTCTAGTGACGATGAAGTCACTGAGCAACAAAATCTTGTATTTAAGCAAGCGAAAgatgaaatcgataataattgtaaaaatgtattttctgaCGTCATGGAGGAATATTGTACAGTACGTGGTATCCTTTCAAAATTTGAATCATGGAGAGAAACAGACATGGATGCCTATACAGAAGCTTATGTATCGTTGTGTTTACCTAAAATTATTTCGCCCATTATCAGATTACAATTACTTACTTGGAATCCGATTATGgaAACCTGTGATCTAGAAAGGACGAAGTGGTATAATACATTACTTCTATATGCTTTAGACAGTAAAGAGACAGAAGAGTCATTAAAACAAGATCCAGATGTTAGATTAATACCATCcacaattgaaaaaattgtgataCCAAAATTGACATctattatcgaaaaaatatgGGATCCAATGTCGACGTCTCAAACGTTACGTCTCGTAGGAACTATAAATCGATTGATAAAGGAATATCCTAATTTGAACGACACTAGTAAAcagtttgaaattttattcaatgctattttagataaaattaaagctgCTATTGAAAACGATGTTTTCATACCTATCTTCCCGAAACAAGTTTGGGATACAAAGCATCAATTCTTTCAAAGGCAATTTGCAATGGCTGTTAAATTATTGCGCAATTTATTAAGTTGGCAAGGTATCCTTGGGGAtatacagttaaaaaatttagcactTGGCTCACTTTTGAATCGTTACCTGCTCGCTGGATTACGCGTTTCTTGTGCAACTGACGCTCTAATCAAGGCAAACATGATTATGAGTACGCTACCAAGAGCATGGCTGCAAGGAGAAACTATTGAACACCTCAAAATGTTCGCTACACTTATTCAACAACTTAGCGAACAGTTAGATCAAGCAAACCCTGCACATAaTGAAGCTTGGGAATACGCAAAGTCCatcctgaaaataattaaacccTTATAA
Protein Sequence
MSLFNKPKRNIRRRPFDDEDEDNENRMEVEDAQPIKVKTKKEKPKQTRLSFGEELEQGDDGEVFIVKKSSRSKKLMKQLDHERRKKKGEEKMQVDTEQANKSIKQEKDLEIKTDDLVVKIKNTGPLILNGRAALAAGKDDYTSGEEEDEPCSHKFRKNTDKAETVKILLESGCIPDAAMIHAARKRRQKARELGTDYIPIEEQSDDKGKSRLIREEDHDRSDDDDSQDRLDMTVNTEARDKEKRREAFLASQVPLKFSDNESEHENEEEEWEAQQIRKGVTGAQIAAAQQDSMLQQQYTMGMNVNQMIGSSVPLEMVLMPAPPPPPSIQPPDPTKIVPITPQEVVNRMRTRLDNLKEVHRRHQQDQERLEGELQQIVKELDESEVRTPQYAQRFRYYQELRGYVTDLVECLDEKLPLVIDLEQRWLDLYSERSVELMERRRQDTRDQAEEITTTARGQTMRRGPEVEIHVRRATEREGRRARRRRARELASNILKHIDGMSSDDEVTEQQNLVFKQAKDEIDNNCKNVFSDVMEEYCTVRGILSKFESWRETDMDAYTEAYVSLCLPKIISPIIRLQLLTWNPIMETCDLERTKWYNTLLLYALDSKETEESLKQDPDVRLIPSTIEKIVIPKLTSIIEKIWDPMSTSQTLRLVGTINRLIKEYPNLNDTSKQFEILFNAILDKIKAAIENDVFIPIFPKQVWDTKHQFFQRQFAMAVKLLRNLLSWQGILGDIQLKNLALGSLLNRYLLAGLRVSCATDALIKANMIMSTLPRAWLQGETIEHLKMFATLIQQLSEQLDQANPAHNEAWEYAKSILKIIKPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01123058;
90% Identity
iTF_01421553;
80% Identity
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