Apic022092.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphaenogaster picea
Gene Symbol
PAXBP1
Assembly
GCA_003063865.1
Location
NJRM01000182.1:52548-58355[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.9e-31 7.3e-27 95.1 3.2 2 272 540 749 539 751 0.92

Sequence Information

Coding Sequence
ATGTCATTATTCAACAAGCCGAAGCGGAACATACGCCGACGTCCCTTCAACGATGAAGACGAGGATAATGAGAACAGAATGGAGGTGGAGGACGCGCAGCCGATCAAAATTAAAACGAAGAAGGATAAGCCAAAGCAGACGCGCCTCAGTTTCGGAGAGGAGCTGGAACAAGGGGACGACGGAGAAGTTTTTATAGTCAAGAAATCGTCGAGGAGCAAAAAGCTGATGAAACAGCTAGATCACGAGAGGAGGAAAAAGAAAGGTGAAGAGAAAATGCAAGTGGACACTGAGCAAGCGAATAAATCCATTAAGCAGGAAAAAGATTTAGAAATAAAGACAGATGATCTAGTAgttaaaataaaaaatacaggaCCCCTGATTTTAAACGGACGAGCTGCATTGGCAGCAGGAAAAGATGACTATACGTCGGGTGAGGAGGAAGATGAGCCTTGCAGTCATAAATTTCGGAAAAATACAGATAAAGCTGAAACCGTAAAAATACTTCTTGagaGTGGATGTATACCTGACGCTGCTATGATTCATGCAGCAAGAAAGCGCAGACAAAAAGCAAGAGAATTGGGAACCGATTACATTCCTATTGAAGAGCAGAGcGATGACAAGGGAAAGTCAAGACTAATACGAGAGGAGGATCACGACCGTAGTGACGATGATGATTCTCAAGATCGGCTAGATATGACTGTCAACACTGAAGCACGtgataaagaaaagagaagagaagcaTTTCTTGCTTCTCAAGTTCCATTAAAATtttcagATAATGAAAGCGAGCACGATAACGAAGAAGAGGAGTGGGAAGCTCAACAAATACGAAAAGGTGTAACGGGTGCTCAGATTGCAGCAGCACAACAGGATTCTATGTTGCAACAACAATATACAATGGGTATGAATGTTAATCAAATGATTGGATCTGGTGTACCTTTAGAAATGGTATTAATGCCtgcaccgccaccgccaccgtccATTCAACCACCAGATCCAACAAAAATGGTTCCTGTTACACCGCATGAAGTTGTGAACAGGATGCGCACAAGGTTGGACAACTTGAAAGAGGTGCATAGACGGCATCAGCAAGATCAGGAACGTTTAGAAGGAGAATTACAGCAAACCATGAAAGAATTGGACGAAAGCGAAGTTCGTACGCCGCATTATGCACAACGCTTCAGATATTACCAAGAGTTGCGTGGGTATGTCACTGACTTGGTAGAGTGTCTTGATGAGAAGCTTCCCCTGGTCATCGACTTGGAGCAACGCTGGTTAGATCTATATGGCGAACGTTCAACCGAATTGATGGAACGGAGACGGCAAGACACGAGAGATCAGGCGGAAGAAATAACTACCGCAGCAAGAGGTCAAGCTATGAGAAGAGGACCGGAAGTAGAAGTACACGTACGACGAGCTACAGAGAGAGAAGGTAGAAGAGCCCGTCGCAGAAGAGCAAGAGAATTAGCTTCAAATATGCCAAAGCACATTGATGGCATGTCTAGTGACGATGAAGTTACTGAGCAACAAAATCTTGTATTTAAGCAAGCGAAAGATGAAATCGATAATAATTGTAGAGATATATTTTCTGACGTTATGGAGGAATATTGTACAGTACGTGGTATCCTTTCGAAATTCGAATCATGGAGAGAAACAGACATGGACGCCTACACAGAAGCTTATGTATCATTGTGTTTACCTAAAATAATTTCGCCCATTATCAGATTACAACTAGTTACTTGGAATCCGATTATGgAAAGCACTGATTTAGAAAGGACAAAGTGGTATAATACATTGCTTCTATACGCTTTAGACAGTAAAGAGACAGAGGAATCATTGAAACGAGATCCAGATGTTAGATTGATACCATccacaattgaaaaaattgtgaTACCAAAATTGACATctattatcgaaaaaatatggGATCCGATGTCAACGTCCCAGACGTTACGCCTTGTAGGAACTATAAATCGATTGATTAAGGAATATCCTAATTTGAATGACACCAGCAAACAATTGGAAACTTTATTCAACgctattttagataaaattaaggCTGCTATTGAAAATGATGTTTTCATACCTATCTTCCCAAAACAaGTTTGGGATACAAAACATCAATTCTTTCAAAGACAATTTGCGATGGCTGTCAAATTACTGCGCAATTTGCTAAGTTGGCAAGGTCTCCTTGGAGATATACAGTTAAAAAACTTAGCGCTAGGCTCGCTTTTGAATCGTTATCTGCTTGCTGGATTAAGAGTTTCTTGTCCAACTGACGCGTTATTCAAAGCAAACatgATTATGAGTACACTACCAAGAGCATGGCTGCAAGGAGAAACTATCGAACATCTCAAAATGTTCGCCACACTTATTCAGCAACTTAGCGAACAGTTGGATCAGGCAAATCCTGCACACAATGAAGCCTGGGAATACGCCAAGTCCATCCTGAAAATAATCAAGCCCTTATAA
Protein Sequence
MSLFNKPKRNIRRRPFNDEDEDNENRMEVEDAQPIKIKTKKDKPKQTRLSFGEELEQGDDGEVFIVKKSSRSKKLMKQLDHERRKKKGEEKMQVDTEQANKSIKQEKDLEIKTDDLVVKIKNTGPLILNGRAALAAGKDDYTSGEEEDEPCSHKFRKNTDKAETVKILLESGCIPDAAMIHAARKRRQKARELGTDYIPIEEQSDDKGKSRLIREEDHDRSDDDDSQDRLDMTVNTEARDKEKRREAFLASQVPLKFSDNESEHDNEEEEWEAQQIRKGVTGAQIAAAQQDSMLQQQYTMGMNVNQMIGSGVPLEMVLMPAPPPPPSIQPPDPTKMVPVTPHEVVNRMRTRLDNLKEVHRRHQQDQERLEGELQQTMKELDESEVRTPHYAQRFRYYQELRGYVTDLVECLDEKLPLVIDLEQRWLDLYGERSTELMERRRQDTRDQAEEITTAARGQAMRRGPEVEVHVRRATEREGRRARRRRARELASNMPKHIDGMSSDDEVTEQQNLVFKQAKDEIDNNCRDIFSDVMEEYCTVRGILSKFESWRETDMDAYTEAYVSLCLPKIISPIIRLQLVTWNPIMESTDLERTKWYNTLLLYALDSKETEESLKRDPDVRLIPSTIEKIVIPKLTSIIEKIWDPMSTSQTLRLVGTINRLIKEYPNLNDTSKQLETLFNAILDKIKAAIENDVFIPIFPKQVWDTKHQFFQRQFAMAVKLLRNLLSWQGLLGDIQLKNLALGSLLNRYLLAGLRVSCPTDALFKANMIMSTLPRAWLQGETIEHLKMFATLIQQLSEQLDQANPAHNEAWEYAKSILKIIKPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01123058;
90% Identity
iTF_01523354;
80% Identity
iTF_00128196;