Nmun011677.2
Basic Information
- Insect
- Nudaria mundana
- Gene Symbol
- Zfa
- Assembly
- GCA_963556515.1
- Location
- OY748292.1:17477476-17487054[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0088 1.1 11.1 1.6 3 23 654 675 653 675 0.96 2 23 0.37 47 6.0 0.3 1 22 1067 1088 1067 1088 0.95 3 23 8 1e+03 1.8 0.4 1 22 1130 1151 1130 1153 0.82 4 23 0.026 3.4 9.6 2.1 3 21 1164 1182 1162 1183 0.94 5 23 0.21 27 6.7 0.1 3 23 1192 1213 1190 1213 0.89 6 23 0.019 2.4 10.0 0.2 3 23 1233 1254 1231 1254 0.96 7 23 0.002 0.26 13.1 2.1 1 23 1260 1283 1260 1283 0.95 8 23 0.13 17 7.3 0.0 1 23 1310 1333 1310 1333 0.90 9 23 0.0059 0.76 11.6 3.5 1 23 1338 1360 1338 1360 0.97 10 23 0.049 6.3 8.7 0.2 1 23 1366 1389 1366 1389 0.95 11 23 0.0025 0.32 12.8 1.3 1 23 1402 1424 1402 1424 0.97 12 23 0.00019 0.025 16.3 1.8 1 23 1479 1502 1479 1502 0.97 13 23 0.00036 0.047 15.4 1.2 1 23 1561 1584 1561 1584 0.96 14 23 0.0025 0.33 12.8 2.1 2 23 1611 1633 1610 1633 0.95 15 23 0.093 12 7.8 0.1 2 23 1639 1661 1638 1661 0.93 16 23 0.58 75 5.3 0.3 1 21 1705 1725 1705 1726 0.83 17 23 0.00045 0.058 15.1 1.0 1 23 1736 1758 1736 1758 0.93 18 23 8.7e-05 0.011 17.4 0.3 2 23 1848 1870 1848 1870 0.93 19 23 3.6e-07 4.6e-05 24.9 1.4 3 23 1877 1897 1876 1897 0.98 20 23 0.021 2.7 9.9 1.2 1 23 1915 1937 1915 1938 0.94 21 23 0.13 17 7.4 0.0 1 23 1964 1986 1964 1986 0.97 22 23 0.0053 0.68 11.8 0.4 1 23 1992 2015 1992 2015 0.96 23 23 0.00027 0.035 15.8 0.4 1 23 2023 2046 2023 2046 0.96
Sequence Information
- Coding Sequence
- atgaatGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCCCGTGGCGATTTACTGCCAATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGTTTCAAAAATCAAGGAGTGCGTCTCTGTAGAGataaACGAAAATGATGAGCTGCCCACTAATGTCTGCAGTAAATGCATGAACAATGTCAATAATTGGCATGTATTTAAAACTGTTTGTGAAAGGACTCAAAACAAACTACAGTCTCTCATTTGTAAAGATGGCAGCCAACTAGAAGAGGTGCAAATAAAGAGTGAACCATTGTCTGATGAAACTTATGATGATGGAGTGGTTATTGAAGGCTCTTATCCTGGCAGTGAGGTTGCTACAGGAACTCACAAAGTTCAACCAGAAGGTCCTCCAATCTTGGCCTCGTTGGGACTCACACCAAGGAGTGATAAGAAGTATGTGGATCCTCGAATGGATTGGCATCGAGTGTGTGCCATCTTGGACATGGTTCAAGACAATGATGTGATTGACTCTCTACAGTCAAAGGAGGAGTGTGATGTTTTGCAATACTCTGATCATGACTCTGATACTGACGCTGAACTTCAACCAGATATTGAAGACAAATATATAGTCTGCAAGAATGGTTATctttgcaaaaataataaaatgttgttgAAAACTCCTCAATTgacaaaagatataaaaaacatCAAAATACGAGAAACTCAGCAACTTAGAAAACGCAAACTAGAACACCTTACTCAAAATTGCCCACGACCTAAAAATGCTTGGCAGTTGTTACTCACTGATGACCTATTAGAATTGATTGTCACCTCCACCAATGAAAATATTATCAAGAATGGTAACAGTTACTCTGTTGCAACCAATGTCAGCGAAATAAAAATGCTTATCGGCATTTTGTATTTACACGGAATAATGCGGCCGACGCATGAGAAATGCACAGAACTATGGCGAGTAGACTGTGGTATACCGTGCGTTAGAAGTACCATGAAATACGAAAGGTTTAAATTCCTTTTACAAAACTTGGCCTTTGATCAAGAGGATGACAATAGCATCATACAATTCGATATAATGAAGCGTATGCGTAAAGTGTTTGAAATCTTCGCCCTGAATTGCAGAACAGCTCACGATATCGGGAATAACGCGGTTATTGATGAGATCATCGTGCCGGCTTATGGACCTTGTCCATTTCGATATGATATTGATAAGAAATCGCTGAAACGCGGTATCAAGCTTGTTATGCTCGTAGATCCGTCTACATTCTATGTGAACAATTTAGATGTCATTACTGACCAATATTTCAGTGCAGaagatataacaaaaaaaattgtccaaCACTTGGCAGGCTCAGGACGAACTATTATTATGGATAGCTGGTATACCTCTTCAACGTTAATAGAAAACCTAAAAAATGAGTACCAATTGTTTTCGATAGCAGCATTAAATCCACAAAGTGACTGGATTCCACCATTGTTTGTttctaaatatagaaaaaaaagaacATTCATGTCCGGATTTGTAAATGAAGATCTGTCGCTCACATCTTATGTGAACTCTGATTTGAAAGTTACAAATATAATGACAAATGAACCGAGATATTACAGAAAAGGTCACACCAATCAAACAACAGTAGTTTCTGCATATAAAAAGAATCAGTCATCTGTAGAAGTAGTTAATGTTCTTATGAATTATTATACCACTATGCAACATACTAATGACTGGGGGTTGTCATTATTTTTTACAATGTTAAATATTGCTTCGGTCAATGCCCAGGGAGtggaaagtgaaaaagaagaggAAGAAGAGGATGAAGGGATGAATGAACCTGCCCAACCTATGTCTAAAGTGCCGAATATACCTGAAGTCTCTATAACTGTAATGCGTCCAACAGGTGAGACGTTGCATGCCCGGCAAGGCATCCATCAGCTCGCTTCGAAAGACTGTCTCGTGTGCGGCCGCACTTACAGGTATTCTCATAATGCCCGTCGACATGAACTCACATCTCACAGCTTCGATAGATATACTAATAAAGTAACATCGAAAAAAGGACACAGTCATTTACAGCCCAAACTCAGACCAAACCCTTTCAACCCCAAAGCAAGGATGATGCCGAATCCTATTAGCCATAAGATGCAATTAATGTCGAAAAACATGCCGGCGAAAGTAGTACCTTTTAGCAAAGTCATCACGCCTCAGAGACCCATACCAATTAAAACTGCTAAACCCACGCAAAACAGTTTACCTTATCCACTTCGCATTAAAGCACTCAAAGATTTACAAATTAAGAAAAAggaacctcaaattttaaagaCGTTGCTAACTTCAAAACCAGAAGTTCTAGTGTCTGAACCTGAAATTGTTAATTCGGGACCTGCGAGTCCAGAAACATTAATTTCGGAACCCGAAATTGCATCATTCCAAGTTGAAGCGATTCTGTCTGAGCCTGATACTGACGTCTATGACCAACAAGGTAACGAGCAAGGTGATGATGAAATTGAAGGGGATGCACATAGTAATCAAGGTCATAACTATGATACGTTGGATATTCACTCTGAAAATGAAATAGAGATTGCTCGACAACAGGGCGATAGAGTTGAAGGGGAAGAACAGGCGGGTGGTGATGAACAAATGGATCAAGATGATAATAATATGGATGGTGGTAATAGTGACAACGATCCGGAAGCAATTGACGATACTGCAGAGATCCAAGAAAATTTAGAAATCGAAAATGGTATGAAAATAAAGGCAGAGCACAACGCGACTAAAGGTGACGCTGACCACGAGGAAAGTGACCATGAAGACAATGATATGAATCACGATGGTAATTATGACGACGACGATGATTTACCTATTTCTATACAACCAGTGGTTGAAATTAATGAAGATATGCAGGTTAACTCGTTTAATACAGAGGGAGGCGCGGACGAGGAAATTGATGACACTGTCAATCCTAATGAAAGTGTCGATCCTAATGACATTCTCGACGAAGACGAGGAGGGTGCCAAAGAACTTGATCCTGATAAAACTTACGTCACAAAGACTCAAAGAGATTTCATTCAGAAATATCGTGACATCATCGAACAAATAAATACGAAACGTTGTTTGTGTTGTGACAGAGAGCATCCTCGTAGAAAAGCTGTTATTCAGCACTTACAAAAAAACGGACACAAGGTACCGAAACATACGTGTTACAATTGTGTGGTCACATTCGGACATATCGGCGCTCTGCTCAGCCACATGAGGTCAAATTCTTGCACGGATTTGTGGAAAATCATTTACAATGAAGATGGTATAACTGATGACTTGGTTTTGGAGGATGAACCCAAGGAGGTTAAAGTTCAGTACAAAGATATATTTAACGCTAGGTCTTATGCATGCAAACTTTGTCCAGCAAAATTCCAATTGAAGCAGTTTATAATGAAACACGTTTTAGATACTCATGAAGATGGACAATCGATGGTTCCTATGAACTGCGTCCATTGTCGATCCAGGTTTAAAGAAAAGAGTTTACTCAAGAAACACATTCGTAACGGTGATTGCACCGTCTATGTAGCTTGTGACTTGTGTCCTGAAAAGTTCACCAATATGCAAACTTTTAATGATCATGCACTGGCTATTCATGCTGGTAGTTTCGAATCTGATACTCAAAGCAAATGTGTCGATGGCCGCCCTACAGACTGTCCATTATGCGGTAAAAAGAATAGCAGCTATCCGAATTTAGTAAAACATTTGAAAATAATTCATAATGAGGAAACACCTCATTATTGCCAACATTGCGATTCTAAATTCGAACAGGCTGCAGACTTGAATAAACACATTTACATAGAACACTCAAACAGGAATTTGGGCATGAATCAGAACACCGATTTGGATATGTCCATTGTGAAGGAGGAGGCGGAAGAGTACCATTACTCGTGCACCGAGTGCAACGCCATATTTGAAACTGTTGACGCTTGGACCGATCATCAGGTGGCCGAGCACAATCAGGTGGCCCATCACTGTGACCAATGTGATAAGAAATTCTTACGGCCCTCTGAGCTTGCAGAACATAAGAATACTCATTTGAGGGTTAAATTCTACCCATGTAGTATATGTGCTAATTCTTATAGCACACCTCAAAAATTATCTGAACATGTTCAGCAATCCCATCCAGGCATAGGTGCGGTCGCTGCAGCAGACACGGAATTCTTTTGCGATATTTGTATCAGGTCTTTCAAGAGCCGTCAAGCATATTCAAACCATATGCGTATACATGCTaaagtacctactactaataGAAAACCTGGAGAAAGCAGCACTCCTTCTAACAAAGGATTTTCACCTTCAATTATTGGGAAACCCATTAAACAAGTTTTCCCTATGGTGCAACCTGGATTTAACGCATTCAAACCTCATTACAATATTCCAAACGCCCCCTATTCATGCGATATTTGTGGAAAAGGATTTATGCACAAAAAGAATATATGGAAACATAAGAAAGTTTTACATGCTGACATATTGAACGAAAGAAATGACAGTGAAGAGAATACGATGCAAGCTTCCACTGAAGAGGACGAATTTAATCCTGACGAAAATGGATCTACACTATCTACGCCACAGTTTAATAGTTTTAATTTTGGCAATTTCGCTAATAATATTCAACAACCACAACAGGATATGCCTTATTCGTGTGAAATATGTTCCAAGCGCTTCCCGCTTAAAACCAGTTTGTGGAAGCATAAACGTGCTAAGCATGGCATTGTAAATTCAAATTCTAGCATTGGTCACGAAATACAAGCACCATCAACAAGTGGAGAAGGTAGTAGTAGGTCTAGTTGCACGATATGTAGAATTACGTTTTCCGATAAGAAATCTTATTATCGCCATCGAAAGAATGTTCATAAGTCTTCTGTTCAAATGTGTAAAATCTGTGGCAAACCACTTAATTCAACTTTAGAACTTTACGAACATTTAAAGGCGGCACACGCCAGAGAATTGTTGGGTTACAATGCTAATCAAGGTTCTAGTAAATCAGTTGACGTTGCACAAGAGACAGAACCAGATTATGACAACGATCACGAAGCCGTAGATCCAAGTGTTGACTACCAAGCACGCTACCCTTGCGATACTTGTGGAAAGCAATTTCTTGGTTTATTGGCATTACAGAACCATCAGTGTGTAAATCAAGGTTCAAGCCAAGCACAAACCTTTGACTGTGAGATCTGTCACAAGAGTTATACCTCAATATCAGCTTTGAAGAGCCACCGAGGATGGCACTTACGATCGCCGGACGGAAAGGCAGCTGCTAATAACAGCGGCCTTTGGATGCCTCAGCACAAAGTCACCAGCAAGATCAGTAAACACGAAATTATTGATCCCGTACAGCTCGCTAAAGTGACTCATTCGAGTCCTGCTGCTGCAGTGGCAGCTAAGAGAAGACTCCCACCGGAGGTCGAAGTCACTGTTGTTAATCCGAATAAAAAATTGCGCTCTGACGATTCCGTGGAATTAGAGCAACAGAACTCGAGTAACGCTGAAGACAGGTACTGCACTATTTGTGATAAAGAGTTCACTAAACGTGCGGCTTATCAGCGTCACATGGAGGAAGTGCATCAACCAAACTCTGTGTTTTGCCCGGTTTGTGACAAGAGTTTTACTAGAAAGTCTACACTACTTGTACACATGAAGAAACACTATGAAGGTGGTGAAGGCAGTTCTAATATGATTGATCAGGTCGAGGAGGATCATACGTGTGATTTGTGTGGAGCTCAATACGACGACGAAGAATCTTTGAGAGTACATCGTGTGAGGCATCACGGTGAGGAGTCTGAGGAAGAAGAGGAAGATGACGAAGGTGACGATGGCAGTGTACCCATTCCACCCCCCGGCGAGTTCACCTGTGGTCAGTGTGGAGATGGCGTGGCCACACCACGAGATCTAATCGCCCACCGCACAATGCACGCTACTCCCACCAAATTTTACTGCAACATATGCAAAGTATACTTTGCGAGGGCAATAGACCTGTCCACCCACACCAGAGCTAGACACGCGGACAACGATAAGGTATTCTTTCCTTGTGCAATGTGCGATAGGTTCTATATGAACAAAAAGAGTTTGCAACGGCACATTGAGATGGCTCACTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGDLLPIFPTTSSDDSEPPVLVSKIKECVSVEINENDELPTNVCSKCMNNVNNWHVFKTVCERTQNKLQSLICKDGSQLEEVQIKSEPLSDETYDDGVVIEGSYPGSEVATGTHKVQPEGPPILASLGLTPRSDKKYVDPRMDWHRVCAILDMVQDNDVIDSLQSKEECDVLQYSDHDSDTDAELQPDIEDKYIVCKNGYLCKNNKMLLKTPQLTKDIKNIKIRETQQLRKRKLEHLTQNCPRPKNAWQLLLTDDLLELIVTSTNENIIKNGNSYSVATNVSEIKMLIGILYLHGIMRPTHEKCTELWRVDCGIPCVRSTMKYERFKFLLQNLAFDQEDDNSIIQFDIMKRMRKVFEIFALNCRTAHDIGNNAVIDEIIVPAYGPCPFRYDIDKKSLKRGIKLVMLVDPSTFYVNNLDVITDQYFSAEDITKKIVQHLAGSGRTIIMDSWYTSSTLIENLKNEYQLFSIAALNPQSDWIPPLFVSKYRKKRTFMSGFVNEDLSLTSYVNSDLKVTNIMTNEPRYYRKGHTNQTTVVSAYKKNQSSVEVVNVLMNYYTTMQHTNDWGLSLFFTMLNIASVNAQGVESEKEEEEEDEGMNEPAQPMSKVPNIPEVSITVMRPTGETLHARQGIHQLASKDCLVCGRTYRYSHNARRHELTSHSFDRYTNKVTSKKGHSHLQPKLRPNPFNPKARMMPNPISHKMQLMSKNMPAKVVPFSKVITPQRPIPIKTAKPTQNSLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIVNSGPASPETLISEPEIASFQVEAILSEPDTDVYDQQGNEQGDDEIEGDAHSNQGHNYDTLDIHSENEIEIARQQGDRVEGEEQAGGDEQMDQDDNNMDGGNSDNDPEAIDDTAEIQENLEIENGMKIKAEHNATKGDADHEESDHEDNDMNHDGNYDDDDDLPISIQPVVEINEDMQVNSFNTEGGADEEIDDTVNPNESVDPNDILDEDEEGAKELDPDKTYVTKTQRDFIQKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTDLWKIIYNEDGITDDLVLEDEPKEVKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDTHEDGQSMVPMNCVHCRSRFKEKSLLKKHIRNGDCTVYVACDLCPEKFTNMQTFNDHALAIHAGSFESDTQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHNEETPHYCQHCDSKFEQAADLNKHIYIEHSNRNLGMNQNTDLDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSICANSYSTPQKLSEHVQQSHPGIGAVAAADTEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGESSTPSNKGFSPSIIGKPIKQVFPMVQPGFNAFKPHYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEFNPDENGSTLSTPQFNSFNFGNFANNIQQPQQDMPYSCEICSKRFPLKTSLWKHKRAKHGIVNSNSSIGHEIQAPSTSGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSVDVAQETEPDYDNDHEAVDPSVDYQARYPCDTCGKQFLGLLALQNHQCVNQGSSQAQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEIIDPVQLAKVTHSSPAAAVAAKRRLPPEVEVTVVNPNKKLRSDDSVELEQQNSSNAEDRYCTICDKEFTKRAAYQRHMEEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSNMIDQVEEDHTCDLCGAQYDDEESLRVHRVRHHGEESEEEEEDDEGDDGSVPIPPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFYCNICKVYFARAIDLSTHTRARHADNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01502318; iTF_00707188; iTF_00157410; iTF_00405251; iTF_00795029;
- 90% Identity
- -
- 80% Identity
- -