Nudd005028.1
Basic Information
- Insect
- Notocelia uddmanniana
- Gene Symbol
- -
- Assembly
- GCA_905163555.1
- Location
- LR991052.1:70119654-70124329[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-16 3.6e-13 50.6 0.0 1 42 112 154 112 157 0.94
Sequence Information
- Coding Sequence
- ATGCTTATTATTTACTTGCAGAACACCGATCCACACATGAACGTGGAACCGCTACCGATGGAGGGCGGCTCTGCTGGTCTACCTCAAGGGGCGCAGTGGAGTATGATGGACACGTACCCCCGTTATTCGAACGCGTGCCTCGGCCTCCAACACGACCCGGCGATGTATATGGGCAATGTCATCAACCAACACATGGAGAATGACATCAACGACTACGCGCAAGCGGTCGGGGTCACCGGCCCGAGCCCGGGGCCCAGCTGCGTCCCCGAAGCGCAAGTCACGCAGGAGCAGACCCCAGTGCAACCCAAAAGACGCCGCGCCACCAACCCACAGTCCGAAGAGAACTTCCAACGCGCGCTGGAAGCCGTCCGCTTCGGCGGCATTGGCTTCTGCAAGGCCGCCAGGATGTTCGGCGTCAACAACAGAACGCTATGGCTCGAGTACAAAAAGAAAGGCTACCCCAACAACCGGCCCAGTATCAAGTCGAGAATCAAGCGCGAGCACACGACGCCGCCTCCGGAACACAAGGAGGAAGCGCCCCTTCAAGAGCAGCAGATGGTCCTCTGCCCCCCACACCCTGTCCCGGTCGGCTTCATAGACTCCAGACCATTGGACTTCCCACTACAGGGCGTCCCGCACAACTCCCCCCTCAATATTCTAGGTGTGAACTTCAATAACATGCAATAG
- Protein Sequence
- MLIIYLQNTDPHMNVEPLPMEGGSAGLPQGAQWSMMDTYPRYSNACLGLQHDPAMYMGNVINQHMENDINDYAQAVGVTGPSPGPSCVPEAQVTQEQTPVQPKRRRATNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEAPLQEQQMVLCPPHPVPVGFIDSRPLDFPLQGVPHNSPLNILGVNFNNMQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148410;
- 90% Identity
- iTF_00410213; iTF_00660233; iTF_00658283; iTF_00657068; iTF_00289552; iTF_00656016; iTF_00654166; iTF_00871222; iTF_00409207; iTF_00411351; iTF_00659385; iTF_00412445; iTF_01133646; iTF_00149303; iTF_00148410; iTF_00680446;
- 80% Identity
- -