Ccan006297.1
Basic Information
- Insect
- Cenopis cana
- Gene Symbol
- -
- Assembly
- GCA_951800055.1
- Location
- OX637471.1:45411671-45414952[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-16 2.3e-13 50.7 0.0 1 42 100 142 100 145 0.94 2 2 5.8 1.3e+04 -2.9 0.0 30 41 145 157 144 158 0.71
Sequence Information
- Coding Sequence
- ATGAACGTGGAACCTTTACCGATGGAAGGCGGCTCCGCTGGTCTACCTCAAGGGGCGCAGTGGAGTATGATGGACACGTACCCACGTTATTCCAACGCGTGTCTCGGCCTCCAACACGACCCGGCGATGTACATGGGCAACGTCATCAACCAACACATGGAGAACGACATCAATGACTACGCGCAGGCGGTGGGAGTTACCGGACCCAGTCCCGGCCCCAGCTGCGTCCCAGAAGCCCAAGTAACCCAGGAACAAACCCCCGTGCAACCCAAACGACGTCGCGCAACTAACCCGCAGTCTGAAGAGAACTTCCAGCGCGCTCTAGAAGCCGTCCGCTTCGGTGGCATCGGCTTCTGCAAGGCCGCCAGAATGTTCGGCGTCAACAACAGGACCCTCTGGCTCGAATACAAGAAGAAAGGCTACCCCAACAATCGACCCAGCATCAAGAGCAGAATCAAACGCGAGCACACGACGCCTCCGCCCGAACACAAAGAAGAACAACCTCTACAGGAGCAACAGATGGTTCTCTGCCCCCCACACCCGGTCCCAGTCGGCTTCATCGACTCCAGACCTCTAGACTTCCCCCTCCAAGGCGTCCCACACAACTCCCCCCTCAATATTCTCGGTGTTAACTTCAACAACATGCAATAG
- Protein Sequence
- MNVEPLPMEGGSAGLPQGAQWSMMDTYPRYSNACLGLQHDPAMYMGNVINQHMENDINDYAQAVGVTGPSPGPSCVPEAQVTQEQTPVQPKRRRATNPQSEENFQRALEAVRFGGIGFCKAARMFGVNNRTLWLEYKKKGYPNNRPSIKSRIKREHTTPPPEHKEEQPLQEQQMVLCPPHPVPVGFIDSRPLDFPLQGVPHNSPLNILGVNFNNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148410;
- 90% Identity
- iTF_01072369;
- 80% Identity
- -